Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02041 ATGGGTTGCTTTTGTTGCGCAGGGAAATCATGCACCAATTCGGACACCGAAGACTATGGCCACAACTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAGAAAGGAAGATGGTTCTAAAGGTGATCAACTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAGGAGGGTTCTCACGATGGAAGAGATAATGGTAATCGGGCACAGTCATTCAGTTTCAATGAACTTGAAGCTGCCACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTAGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGGCTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGATCTTCGGCCTGGTAGCAAGCCACTGGATTGGAACACAAGAATGAAAATAGCAGCTGGGGCAGCTCGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTGATATATCGCGATCTGAAATGCTCTAACATTTTGCTAGGAGAGGGATATCATCCTAAGTTGTCGGATTTTGGCCTGGCAAAAGTAGGTCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAATTGACGTTTAAGTCAGATATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTTATCACAGGAAGAAAGGCCATTGACCATATGAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGATAGGAAAAAGTTTCCCCAGATGGTTGATCCTTTACTTGAAGGTCGATATCCGGTGAGAGGGTTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTTCAGGAGCAGCCTAATATGCGACCTGTTATAGTTGATGTTGTTACAGCTCTAAACTACTTAGCTTCTCAGAAGTATGATCCTCAACTTCATCCAGCACAAAGCTCTAGAAGAAGTCCACCTTCTCAGGTAATGCAAAGGGATGATGATGATGAACGTAGACTCATTTTAAGCACCGAGCATCATGTCACAGACAGATCATAA 1254 0.441 MGCFCCAGKSCTNSDTEDYGHNFDQKPSNFTAAESVKVDFKVNGRKEDGSKGDQLALDVKSLNLKEEGSHDGRDNGNRAQSFSFNELEAATGNFTADCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEFMPLGSLENHLLDLRPGSKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHMKPAKEQNLVAWARPLFRDRKKFPQMVDPLLEGRYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQLHPAQSSRRSPPSQVMQRDDDDERRLILSTEHHVTDRS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02041 417 FunFam probable serine/threonine-protein kinase RLCKVII 66 170 - -
Viun11g02041 417 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02041 417 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Viun11g02041 417 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02041 417 MobiDBLite consensus disorder prediction 393 417 - -
Viun11g02041 417 CDD STKc_IRAK 100 369 - -
Viun11g02041 417 Pfam Protein tyrosine and serine/threonine kinase 99 310 IPR001245 GO:0004672|GO:0006468
Viun11g02041 417 MobiDBLite consensus disorder prediction 379 417 - -
Viun11g02041 417 PANTHER OS07G0668900 PROTEIN 51 379 - -
Viun11g02041 417 FunFam Serine/threonine-protein kinase PBS1 171 386 - -
Viun11g02041 417 SUPERFAMILY Protein kinase-like (PK-like) 80 392 IPR011009 -
Viun11g02041 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Viun11g02041 417 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Viun11g02041 417 Gene3D Phosphorylase Kinase; domain 1 79 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02041 Viun-Chr11 35932907 35936042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02041 1 373 Glycoside Hydrolase AT3G07070 55.200 8.73e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun11g02041 PK_Tyr_Ser-Thr 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02041 - - gmx:100804000 754.592