Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02040 ATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACATAAATATGATTTTTGACAAAAAAAGCCTCAATTGTGGAGTAGCCAATGGAGGGGTAAGTTCTGGATCATCAACAGAAGATAACCCAAGATTTAATAAGCTGAGTCAAGATGGAAACAATAGATTGAGGGGTCTGATTCAAATCAATGGGAGCTTGCAGGTTTCACAGCAACCACCTCAAGGGCCAGTCATTTGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAGGATGATGATTCAACACGCCATGTTGTGCGTGCTCTTTTACGCAATTGTAGTTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCCTGGAAAGTCCTAGAAGATCCAGAAAATTGCATCGGTCTTGTCTTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAGAATATCCCTGTGATTATGATGTCGTCTCATGATTCTATGGGTATCGTCTTTAAGTGTTTATCAAAAGGCGCTGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAATCTCTGGCAGCATGTCTGGAGAAGATGCCACAGTTCTAGTGGCAGTGGGAGTGAAAGTGCAACCAACACCAGAAAATCTACGAAGTCAAGAAGTAACGATGCTTCTGAAAACAATAGTGACAGCAATGAGGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCACTTTCACCACATAAACAATTGGTTGATGCCCCTGATAGCACTTGTGCCCAAGTGATGCAAACGAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCAACAGAAAAGGAGTGCCTTGAACTTATTGATCATCTTGATGATGTTGCGATGGGCAAGGACTTAGCTGTGGGAATATCTTTGAGTATGCAACTAGAGCATCGACTTGAGGGACTGTCTAGCCATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGATGATGATATGCAGATAGTTAAAGGACAAAGTAATGCCTGTGAAAAAGGAGAACTGGAATGCAATGGTGGTAAAACCAGGACACAGGAAAATCAGACTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTCTCTGGTTTCTCACTAACGAAAGAAAACTGTTGCCCCAAAGAGCATCCATCCCTGGAACTATCTTTGAAAAGGCTGGGAGAAGTAAGAGATCCTAAAAATGTCACGGGTGAAGAATGCAATGTTTTAAGACATTCAGACCAATCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACCCGAAATGTAGGAAGCTGTTCTCCACTAGCCAATGGCTCAGCTGCACCTAATGCAGAGGTAATACACAACTTTCCATCTCACTCAAATGTCACTCCTCCAAACCAACAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCACTAATACATATCTTGGCACCAAACCTTGTACTTTTGACAAGATGCCAGAGTCTGTAAGAGGGCTGGGCTCATTTAATTCCTCTGAACGCCGAACTTTACCGAACAATAGTAAGAAAACTTATGCCCGGGAAGAATATATGGAAATTGTTAGAGGACAACTGGGAAGCTCTGAACATGAATTCCAAGCCGAGCACACTCATTATGAGCATCACCATTATAATCACATTTCCCGTAAAGCTGCTGTAGATCTCCAATCAGAGCATGATCTCTTACTCAAAAGCTCAACCAACACTGCTCAGCAATGTGTATCATCAAATGCGTTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAATAGATGGAAATGCTGGGGAGAGTGATCACGGGAGCAATGGACATGGGAGCAATGGACAGGACGGAACCTTGACAATGAGGACAGTAAATATGGAAAATGGCAATGTGGCTTCTGGGAGCTTTGGAGTTGGTGGCATTGATAGGAAAAACATTGGGAATGGGGCAGATGAAGGACGACTTTCACTGAGAGAGGCTGCTTTGACCAAGTTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGAAACCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATCATACCGACATTCCTCAATAA 2358 0.4262 MLGKGKEVWQNIIXMIFDKKSLNCGVANGGVSSGSSTEDNPRFNKLSQDGNNRLRGLIQINGSLQVSQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATNTRKSTKSRSNDASENNSDSNEENDYGSKGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPLSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECLELIDHLDDVAMGKDLAVGISLSMQLEHRLEGLSSHPMGKGANKMSDDDDMQIVKGQSNACEKGELECNGGKTRTQENQTMNVIDVTDSNSPQAESRDLNTPNGFSGFSLTKENCCPKEHPSLELSLKRLGEVRDPKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTRNVGSCSPLANGSAAPNAEVIHNFPSHSNVTPPNQQSNGSNNINDMASTNTYLGTKPCTFDKMPESVRGLGSFNSSERRTLPNNSKKTYAREEYMEIVRGQLGSSEHEFQAEHTHYEHHHYNHISRKAAVDLQSEHDLLLKSSTNTAQQCVSSNAFGGPAESNAANYTIDGNAGESDHGSNGHGSNGQDGTLTMRTVNMENGNVASGSFGVGGIDRKNIGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSETKEEKDHQSDNLVPGDHTDIPQ 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02040 786 PANTHER TWO-COMPONENT RESPONSE REGULATOR 88 421 IPR045279 GO:0009736
Viun11g02040 786 MobiDBLite consensus disorder prediction 761 777 - -
Viun11g02040 786 MobiDBLite consensus disorder prediction 213 288 - -
Viun11g02040 786 ProSiteProfiles CCT domain profile. 718 760 IPR010402 GO:0005515
Viun11g02040 786 MobiDBLite consensus disorder prediction 639 682 - -
Viun11g02040 786 Pfam CCT motif 718 759 IPR010402 GO:0005515
Viun11g02040 786 CDD psREC_PRR 89 192 - -
Viun11g02040 786 Gene3D - 86 252 - -
Viun11g02040 786 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
Viun11g02040 786 MobiDBLite consensus disorder prediction 255 273 - -
Viun11g02040 786 FunFam Two-component response regulator-like PRR37 87 245 - -
Viun11g02040 786 MobiDBLite consensus disorder prediction 761 786 - -
Viun11g02040 786 MobiDBLite consensus disorder prediction 510 537 - -
Viun11g02040 786 SMART REC_2 87 202 IPR001789 GO:0000160
Viun11g02040 786 Pfam Response regulator receiver domain 89 200 IPR001789 GO:0000160
Viun11g02040 786 MobiDBLite consensus disorder prediction 213 248 - -
Viun11g02040 786 SUPERFAMILY CheY-like 85 211 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02040 Viun-Chr11 35893723 35922617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02040 34 302 Response Regulator Gene Family AT5G60100 60.932 7.53e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Viun11g02040 Response_reg 5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02040 K12129 - gmx:100785796 1045.03