Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02036 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGTTGCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCTAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCGGTTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCATAACGAAGGAGCTGTTTCCGGCGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGGAACAGTGAGATAAAGATGCTTCAGCCGCAGCCTCAGAGTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCACATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTGAGACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGTAACGGAAGGGAAGCAGTGACCAATTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTGGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGATCAATGATGGAAACCAATGTTAATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAGTGAAGATTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAAAGAACGAACACGGACCATTTGAAAGGAGTCCCCAATTGGGCATGGCAAACACATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCAGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCCACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAAAGTCTCTGTTTTACTTCATCAAGCACACATTCATCTGAATACTATTACCAGGTTAAGCCCCCTCAGGCACCACTGTAG 1452 0.4752 MLDLNLNAEWTDSARDGDSPLPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGANDVITKELFPASGGVATSSFSARKSFVDLAFDREGGNSEIKMLQPQPQSQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVGNHNLDLNLGIATPGTGPKENWQQLQFPSVHYNTHGGIRSMMETNVNSGVGNPSLKRLVVSEDCPSVWNGMCPSFFPNEEKTERTNTDHLKGVPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNSNPQSLCFTSSSTHSSEYYYQVKPPQAPL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02036 483 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 CDD AP2 150 208 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 MobiDBLite consensus disorder prediction 121 139 - -
Viun11g02036 483 SUPERFAMILY DNA-binding domain 241 300 IPR016177 GO:0003677
Viun11g02036 483 MobiDBLite consensus disorder prediction 1 59 - -
Viun11g02036 483 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Viun11g02036 483 FunFam AP2-like ethylene-responsive transcription factor 241 301 - -
Viun11g02036 483 MobiDBLite consensus disorder prediction 119 151 - -
Viun11g02036 483 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 Pfam AP2 domain 241 291 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Viun11g02036 483 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Viun11g02036 483 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Viun11g02036 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 334 - -
Viun11g02036 483 MobiDBLite consensus disorder prediction 32 58 - -
Viun11g02036 483 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Viun11g02036 483 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02036 Viun-Chr11 35815201 35819352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02036 73 325 AP2-EREBP Transcription Factor Family AT4G36920 66.418 1.44e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun11g02036 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02036 K09284 - gmx:100788303 754.977