Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02035 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGTTGCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCTAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCGGTTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCATAACGAAGGAGCTGTTTCCGGCGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGGAACAGTGAGATAAAGATGCTTCAGCCGCAGCCTCAGAGTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCACATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTGAGACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAACAGGGCTTATGACAAGGCAGCTATCAAATGTAACGGAAGGGAAGCAGTGACCAATTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTGGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGATCAATGATGGAAACCAATGTTAATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAGTGAAGATTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGCAGGAAAAAACAGAAAGAACGAACACGGACCATTTGAAAGGAGTCCCCAATTGGGCATGGCAAACACATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCAGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCCACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAAAGTCTCTGTTTTACTTCATCAAGCACACATTCATCTGAATACTATTACCAGGTTAAGCCCCCTCAGGCACCACTGTAG 1413 0.4791 MLDLNLNAEWTDSARDGDSPLPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGANDVITKELFPASGGVATSSFSARKSFVDLAFDREGGNSEIKMLQPQPQSQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKNRAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVGNHNLDLNLGIATPGTGPKENWQQLQFPSVHYNTHGGIRSMMETNVNSGVGNPSLKRLVVSEDCPSVWNGMCPSFFPNEQEKTERTNTDHLKGVPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNSNPQSLCFTSSSTHSSEYYYQVKPPQAPL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02035 470 SMART rav1_2 242 291 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 CDD AP2 150 208 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 MobiDBLite consensus disorder prediction 121 139 - -
Viun11g02035 470 MobiDBLite consensus disorder prediction 1 59 - -
Viun11g02035 470 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Viun11g02035 470 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 320 - -
Viun11g02035 470 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Viun11g02035 470 CDD AP2 241 287 IPR001471 GO:0003700|GO:0006355
Viun11g02035 470 MobiDBLite consensus disorder prediction 119 151 - -
Viun11g02035 470 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Viun11g02035 470 SUPERFAMILY DNA-binding domain 241 286 IPR016177 GO:0003677
Viun11g02035 470 MobiDBLite consensus disorder prediction 32 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02035 Viun-Chr11 35815201 35819352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02035 1 434 AP2-EREBP Transcription Factor Family AT5G60120 46.022 2.88e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun11g02035 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02035 K09284 - gmx:100788303 754.592