Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02033 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGTTGCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCTAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCGGTTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCATAACGAAGGAGCTGTTTCCGGCGAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAAAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGGAACAGTGAGATAAAGATGCTTCAGCCGCAGCCTCAGAGTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCACATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTGAGACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGTAACGGAAGGGAAGCAGTGACCAATTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTGGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGATCAATGATGGAAACCAATGTTAATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAGTGAAGATTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAAAGAACGAACACGGACCATTTGAAAGGAGTCCCCAATTGGGCATGGCAAACACATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCAGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCCACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAAAGTCTCTGTTTTACTTCATCAAGCACACATTCATCTGAATACTATTACCAGGTTAAGCCCCCTCAGGCACCACTGTAG 1407 0.4783 MLDLNLNAEWTDSARDGDSPLPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGANDVITKELFPASGGVATSSFSARKSFVDLAFDREGGNSEIKMLQPQPQSQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVGNHNLDLNLGIATPGTGPKENWQQLQFPSVHYNTHGGIRSMMETNVNSGVGNPSLKRLVVSEDCPSVWNGMCPSFFPNEEKTERTNTDHLKGVPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNSNPQSLCFTSSSTHSSEYYYQVKPPQAPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02033 468 CDD AP2 150 208 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 MobiDBLite consensus disorder prediction 121 139 - -
Viun11g02033 468 MobiDBLite consensus disorder prediction 1 59 - -
Viun11g02033 468 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Viun11g02033 468 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Viun11g02033 468 Gene3D AP2/ERF domain 241 285 IPR036955 GO:0003700|GO:0006355
Viun11g02033 468 MobiDBLite consensus disorder prediction 119 151 - -
Viun11g02033 468 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 SMART rav1_2 242 290 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Viun11g02033 468 SUPERFAMILY DNA-binding domain 241 285 IPR016177 GO:0003677
Viun11g02033 468 CDD AP2 241 286 IPR001471 GO:0003700|GO:0006355
Viun11g02033 468 MobiDBLite consensus disorder prediction 32 58 - -
Viun11g02033 468 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02033 Viun-Chr11 35815201 35819352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02033 1 432 AP2-EREBP Transcription Factor Family AT5G60120 46.022 6.12e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g02033 AP2 6.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02033 K09284 - gmx:100788303 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03461 5 44661726 44666157 Viun11g02033 11 35815201 35819352 PCT