Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02016 ATGGATCCTTCCACCGGACAACACCAGCAAATGTCGAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTGAAGTGTCCCAGATGTGACTCAACCAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCCCAGCCGAGGTACTTCTGCAAATCCTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCGTCGTCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCTCTCACTGGTCTTCCTTCGTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTGGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAACATGACTTTTCAATTCTGGGGAACCCCACAAGCACCCCTTGCGATATCCTTGGGAACCCTGGCATGCACCACTCTTCCACAAACCCAGGGTTCTTGGATTCTCTCAGAAGTGGGTTCCTCGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGCTGGTGCTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCAACAACACAAGCAGTCACAGTGACCACCATGAAACAAGAACTTTGCAATGCAAGGGAGCAAAGTGAGAGTAGTAGGGTGCTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAACTTGACTCAGGAAGAGCTAATTGGAATGGCCTCACTTCATCTTGGCATGGACTTCTCAATAGTCCTCTAATGTAG 921 0.4799 MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSSSKRIQDQGFTPNPNNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACAGAGGGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESSRVLWGFPWQLNGDTNMAELDSGRANWNGLTSSWHGLLNSPLM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02016 306 MobiDBLite consensus disorder prediction 90 124 - -
Viun11g02016 306 MobiDBLite consensus disorder prediction 83 124 - -
Viun11g02016 306 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g02016 306 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Viun11g02016 306 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Viun11g02016 306 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Viun11g02016 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 196 IPR045174 GO:0003700|GO:0006355
Viun11g02016 306 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02016 Viun-Chr11 35714145 35716098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02016 1 306 C2C2-Dof Transcription Factor Family AT2G28510 39.820 7.53e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun11g02016 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02016 - - gmx:100799737 474.552