Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02005 ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCCCCACTTTCTCACTCCCCCACTTCCTCTTCTTCCTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTCGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCTCACCGTGTGTTTGGTGCCAGTAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTATGAGGCAAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCAAAGTCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCAAATCTTGTGGCTCTAATTTGCATGGAAATGGCACAGAATCCACAGGAATCACCACAACAATCAGTGGACAATTTCATTTCAACTCCTCCTCACAGTGGTGGCTATCAAAGTGGCATCAACAACTTCTTTGAGGACAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA 615 0.4797 MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQNPQESPQQSVDNFISTPPHSGGYQSGINNFFEDNTSPNSLWEPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02005 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Viun11g02005 204 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g02005 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Viun11g02005 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 162 - -
Viun11g02005 204 Coils Coil 117 144 - -
Viun11g02005 204 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02005 Viun-Chr11 35657845 35659837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02005 34 204 AS2 family AT1G07900 66.092 1.25e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun11g02005 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02005 - - gmx:100789504 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02005 11 35657845 35659837 Viun11g02005 11 35657845 35659837 ECH
Viun5g03443 5 44510623 44511963 Viun11g02005 11 35657845 35659837 PCT