Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02003 ATGGAGCAGCGCCGGGAGTTCGCCACCGCCGAGGTCATGGAATCCGACTTGGAATTTGCCTTTCGCCTCCAATTGCAGGAGGCTCTCGAGGTCTCCCTCGCCGTGAATCCGTCGTCTTCCTCCGCCGTTCTTGAACAGCCTATTGTTGAAGTTGAAGACGCAGTGAACCTGACCTCACTGCAGAACGAGGAGTTGGCGCGTGTGGAGTGCGAGTTGAAGGACAGGGAACAGAGCGAGAGGGAAATGCAAAAGATGAGGGACGATCTCAGTCGAAGGTTTCACGACCAGAAGGTGGCGAGGGATTTATTGTTGATTTCTGAGGCGGATTGGCAAGAGTGGGGCGATCACTTTGAGAAACCGTTCGGTGAGGGTTCATCGTCGTCGCGTAAGACGGGGACGGAGGAAGGGATGGTTAGGGTTTACTTGAAGGGTTTGGTGAGCGAGGAAACCGTGAGGGGGAAGAAGGTTCTGTTATCTGGGATAGGGGTTGCGATCTGTGACGGAAGGAATAATTTGCTATTTGAGGTTTCTAAGTCGGTGATTGGGAATGGCACTAGCAAGGTTGCTGTGGAGATGAAGGCGTTGATTGAAGCCTTCAAGATGGCCCTTGCTATGAACTTAAAGCGCATAACCTACTACACCGATTATCTTCCGCTTCTTCAATTTGTGAGAGGAAAATGGTCTGCAAGGCAGCGGAAGATTGCCATGTTGGTTGATCAAATTCGTGTGCTTCAATTGAAGTTTACATACTGTGATTCAAGGCTTTTGGCCAGAAATGATGTCAAGTTTGCATTTAAGCTTGCGAGAGATGCCATTGTGTCTCAGTCTATGAGACCCACTGAACCTGGGAGTACGAGGAGTTTGAATGAAACCTGTGCTATATGTTTGGAGGATACTGATGCCAGTCAGATTTTTTCAGTTGATGGATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTTGAGGTGAAGTTGCTTCATGGAATTGCGCCTAAGTGCCCTCATGAGGGATGCAAGTCTGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAATTTAATTGATACCATGCGTCAACGGAATTTGGAAGCTTCAATTCCTGTTACTGAAAAAGTTTACTGCCCTTATCCACGATGTTCTGCATTAATGACAAAAACTCAGGTCTTTGAGTACTCGAAAAATCTTATTGGTGGATCTGTACTGTCGGGGGCCAAAAAATGCTTAAACTGTCATGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGCCATGTTTTATTTACAAAATGTTGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTGAAGTCTCTGGCATCAACGAGCCTGTGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTTGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGAACAAAAGAGCAACGTGTTCTTGCCCACTCTGGGTGGAGGAGAATATTTGGTTGGAGGAGAGAGATCTGGACGAGGATGACGACGAGGATGATGATCCCTTTGGATGA 1590 0.4704 MEQRREFATAEVMESDLEFAFRLQLQEALEVSLAVNPSSSSAVLEQPIVEVEDAVNLTSLQNEELARVECELKDREQSEREMQKMRDDLSRRFHDQKVARDLLLISEADWQEWGDHFEKPFGEGSSSSRKTGTEEGMVRVYLKGLVSEETVRGKKVLLSGIGVAICDGRNNLLFEVSKSVIGNGTSKVAVEMKALIEAFKMALAMNLKRITYYTDYLPLLQFVRGKWSARQRKIAMLVDQIRVLQLKFTYCDSRLLARNDVKFAFKLARDAIVSQSMRPTEPGSTRSLNETCAICLEDTDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGIAPKCPHEGCKSELLVDSCQKFLTQNLIDTMRQRNLEASIPVTEKVYCPYPRCSALMTKTQVFEYSKNLIGGSVLSGAKKCLNCHGLFCFNCKVPWHSGMPCFIYKMLNPNPPAEDLKLKSLASTSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKNKRATCSCPLWVEENIWLEERDLDEDDDEDDDPFG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02003 529 ProSiteProfiles Zinc finger RING-type profile. 292 336 IPR001841 -
Viun11g02003 529 ProSitePatterns Zinc finger RING-type signature. 310 319 IPR017907 -
Viun11g02003 529 SUPERFAMILY Ribonuclease H-like 159 246 IPR012337 -
Viun11g02003 529 Gene3D - 430 526 - -
Viun11g02003 529 FunFam RBR-type E3 ubiquitin transferase 138 275 - -
Viun11g02003 529 Pfam Reverse transcriptase-like 157 271 IPR002156 GO:0003676|GO:0004523
Viun11g02003 529 SUPERFAMILY RING/U-box 290 371 - -
Viun11g02003 529 Coils Coil 68 88 - -
Viun11g02003 529 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 94 509 IPR031127 GO:0004842|GO:0016567
Viun11g02003 529 SUPERFAMILY RING/U-box 446 509 - -
Viun11g02003 529 FunFam RBR-type E3 ubiquitin transferase 430 528 - -
Viun11g02003 529 CDD BRcat_RBR_unk 372 435 - -
Viun11g02003 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 371 IPR013083 -
Viun11g02003 529 Gene3D - 139 278 IPR036397 GO:0003676
Viun11g02003 529 SMART ibrneu5 445 502 IPR002867 GO:0008270
Viun11g02003 529 SMART ibrneu5 359 432 IPR002867 GO:0008270
Viun11g02003 529 Pfam IBR domain, a half RING-finger domain 446 500 IPR002867 GO:0008270
Viun11g02003 529 Pfam IBR domain, a half RING-finger domain 374 432 IPR002867 GO:0008270
Viun11g02003 529 ProSiteProfiles TRIAD supradomain profile. 288 512 IPR044066 -
Viun11g02003 529 CDD RNase_H_like 159 269 IPR044730 -
Viun11g02003 529 FunFam RBR-type E3 ubiquitin transferase 287 372 - -
Viun11g02003 529 CDD Rcat_RBR_unk 458 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02003 Viun-Chr11 35635346 35645278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02003 139 491 C3H Transcription Factor Family AT2G19610 34.262 2.97e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02003 - - aprc:113858620 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02003 11 35635346 35645278 Viun11g02003 11 35635346 35645278 ECH