Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01985 ATGGAATTTGATCTGAACCATGAAGTCACTGAGGTTGAGAAGAATGCATTCTGTGACAGGGAATGTGAGAAAGATGCTGGTGTTACTTGCTGGTCCTCTTCCACTTCTTCATCTTCTAGTTCCTCTTCAGCTCGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCCGAGTTGGAAGGAATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAAGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAACTTAGGTTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCCAATGTCCTTTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGGGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACATTGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGACTAATCATCAAGACCGAATATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGCACGAGGCAGTGGGTTGGTGGGATTTGAGGAGTCTGTAAGATCACCTAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTATGTCACTCTACTACGGATGTGACACGGTAACCAAGCCGCTAGGTTTTGAGATGAGTTCTCCGAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTTAGTGGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATTTGAATCTTGGTGCTTGGGGAATGCCCAATCTGGGTTTCAATCTCCACCAAGCAACCAAACCCAATTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGGTCAAGCTAGTTTCTTTGGCTCAAAATCCACCACTTTCCAAAGAGAGAGTGTCCCATTTAATAAACCACCATCCACTCAGGCAGGAATCATTGTAAATGAAGTTAGAAGACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATGGGGGTTCCTAATGAGAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGGGAAACCACTGCACAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTGATAATGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGACCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATCAGCGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2379 0.4468 MEFDLNHEVTEVEKNAFCDRECEKDAGVTCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRASHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCNSGTLIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRISPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSQLITARGSGLVGFEESVRSPKVLQGQENAGFMSLYYGCDTVTKPLGFEMSSPSHPNLGSAEVRKVTSSELSGVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAGQASFFGSKSTTFQRESVPFNKPPSTQAGIIVNEVRRPELPNEHKLQDNLSAAAALGAANMGVPNENNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDNGWRILYTDSENDIMVVGDDPWHEFCDVVTKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01985 792 FunFam Auxin response factor 327 400 - -
Viun11g01985 792 Gene3D - 660 753 - -
Viun11g01985 792 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Viun11g01985 792 CDD B3_DNA 162 264 IPR003340 GO:0003677
Viun11g01985 792 ProSiteProfiles PB1 domain profile. 664 746 IPR000270 GO:0005515
Viun11g01985 792 FunFam Auxin response factor 162 266 - -
Viun11g01985 792 Gene3D - 327 398 - -
Viun11g01985 792 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Viun11g01985 792 Gene3D - 162 266 IPR015300 -
Viun11g01985 792 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun11g01985 792 FunFam Auxin response factor 659 753 - -
Viun11g01985 792 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Viun11g01985 792 SMART B3_2 164 266 IPR003340 GO:0003677
Viun11g01985 792 SUPERFAMILY CAD & PB1 domains 667 743 - -
Viun11g01985 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 753 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01985 Viun-Chr11 35527342 35533254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01985 46 792 B3 DNA Binding Superfamily AT5G60450 60.550 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun11g01985 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01985 - - gmx:100783513 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03430 5 44421797 44427608 Viun11g01985 11 35527342 35533254 PCT