Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01981 ATGATGTCTGAAGAACCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCCAGCTCAAACCCTAATAATAACAATCCTAACCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGCCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCCAAGTCCCTGATGGCCACCAACCGTTTCATATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGCGGGCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATAACGATCCCTCTAGAGCCTTGGGAGACTTGACAGGCATAAAGAAGCACTACAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAACAACGACAACAGTTCCCCCAGCTTTAAGCAACTTGAGAAATGATCATCCCTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTGGTTCAGGAACATCAGAAACACTGGTGAATTATGCTGAGGCAAACCATCATCATCATCATCATCATCATCAACAACAACAAGAACAACAACTGCAGCAGCAAAAGCTGAGGTTACCACTCTGGCTAGACCACCAGGTGAATTCACAAGTACTTCACCACCCTCTTATGAACTTCCCAACCAAACCAGGTGCTTTCAGTTCTCCGGGGCCAAACCCTGTGCCTGATATGGTGCAAACTATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGCGAGCTCGAATTTGTACTTGAGTAGTAACCAGAACCCACCTCATTACATGTCAGCCACTACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACAAGGGTGAACGACAACGCGTTTTGCTCGAATAGGAACAGCAACCACAACAATGTTGTCAACAACAACAGCAACGTTGTTGTTGAGGTTCAGAAACTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGTGGGTATTTATTGAATGATGACTCAAACAATAACTCGTTTGTGGTTGTGAATGGCACGAAGGGTTTTGAGCACATGATGATGCCGGTGGATGAAGAGACAAGAGCAGCATCAATTATGGGAAAGCAATTACACTCCATAAGCAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATTGAATCAATAAGGAGACCTTTCGAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGGCATTAACCTGCAGAGGCAGTACGGTGGACACTATGTGTAG 1656 0.462 MMSEEPFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHNDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTTTTTVPPALSNLRNDHPLTNAQASRIPQIFSGFHSDQFGGGSGTSETLVNYAEANHHHHHHHHQQQQEQQLQQQKLRLPLWLDHQVNSQVLHHPLMNFPTKPGAFSSPGPNPVPDMVQTMDMFGPQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSNRNSNHNNVVNNNSNVVVEVQKLDELVSVEGCTNLGGGGGGYLLNDDSNNNSFVVVNGTKGFEHMMMPVDEETRAASIMGKQLHSISKNQLGLTRDFLGVGDNNIESIRRPFXEQDLVEFNAMGSASGINLQRQYGGHYV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01981 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Viun11g01981 552 MobiDBLite consensus disorder prediction 258 279 - -
Viun11g01981 552 Gene3D Classic Zinc Finger 49 123 - -
Viun11g01981 552 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Viun11g01981 552 Gene3D Classic Zinc Finger 124 204 - -
Viun11g01981 552 MobiDBLite consensus disorder prediction 368 384 - -
Viun11g01981 552 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Viun11g01981 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 522 IPR031140 -
Viun11g01981 552 SMART c2h2final6 70 92 IPR013087 -
Viun11g01981 552 SMART c2h2final6 147 167 IPR013087 -
Viun11g01981 552 SMART c2h2final6 112 142 IPR013087 -
Viun11g01981 552 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Viun11g01981 552 MobiDBLite consensus disorder prediction 353 384 - -
Viun11g01981 552 MobiDBLite consensus disorder prediction 18 43 - -
Viun11g01981 552 MobiDBLite consensus disorder prediction 1 55 - -
Viun11g01981 552 FunFam protein indeterminate-domain 12-like 49 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01981 Viun-Chr11 35465696 35468900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01981 40 221 IDZ Gene Family AT3G45260 82.418 3.19e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01981 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01981 K25870 - gmx:100817691 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03422 5 44371842 44374407 Viun11g01981 11 35465696 35468900 PCT