Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01954 ATGGCGGAACCTGTCGCCAACACCCAACTCTCTCCCTCTAAAACCCTAGATTCAACCAACGGTCATGATTCTACTATGGAACCGAATCAAATGCTTCCACAAGACGCTCAACTCAATCAAGAAAACGACGGCGTCGTTTCGACGGGGAAACGGAGTAGGGAAGACGACGACGGCGAGGAGCGTTCGCTTCATCCCATGTGGAAGACCAGCCTCTGCTCCTACTACAGGAGCCACAACAACACATGCAACCACGGTGACACGTGCCGCTACGCGCACGGCGAGGAGGAACTGCGCCCTCGCCCCGATAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTGAAGACGGAGACGGACGAAAAGTGCGCCGCCTCGGAGGACGTGATGATGACGGAGGCTGTTGTCGACGGCGACGATATCGATTCCAATCACGCGTTTAGCAAATGCTTGGTGCATTTGCCGCGTAGGTGGTGTTCCGAGGATTTGAGGAATTTTCTCAGCCAGCAGGGTATAGCTTTTAAGTATGCTAAGAAAAAGAACGGCATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAAGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTATTAAACACAAATAACGACAAATTGACTGGTGATGGTTCTGTGGGTAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATTCCCTATGCTGATCAATTGGAGCAGAAAAAAACCTCTCTCATGCAGATTCTCAAAAAGCTTACTAGAAATGCTCGCAAAGCTTGTCCAGATGGGGTTTCTCTTCCTGAGTGGATTCTCAATTCTAGGGAAATAGGTGGTCTTCCGTGTAAACTAGAAGGTATTATTGCATCTCCAATTGTAGATGGATACCGGAACAAGTGTGAATTCTCTGTTGGATATTCTCTGAAAGGCAATGTGACTGTAGGTTTTATGCTGGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAACCGAGTGCCCAAATGTTTCAACGATTGCTAGCAAATATGTTACAATGTTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAATGGAAATACTGATCATGCTGAAACTTTTGGAGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTGCTGAATTTAAGAGGCTTGCTCTGGCATTTGTTGCTGGAGCTACTTCGCATTGTCCAACATTACCCCTCACGGCTCTGTTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCCGCTGATGCACCACTGCATTTGCTACCACTTCCTAAAGCAGGTGGGGATCCTGAGATAGATGAAAACAACAATGCCATGGATGTGAGAATCCATGATTATATCAACAATCTCCGGTTCTCTATATCTCCAACTGCATTTTTCCAGGTAAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTGCTTTTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGGTTGGAATTGAAATGAATGCTTCTGCAGTGTCTGATGCCCATAGGAACGCCGAGATTAATGGCATAAAAAACATTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAGCAAGATGATTCTAATACCCCTAAAAGTGGCTATGACATTCCTGAGGATAGTGCCTGCCCAGAGGCTGAAAATGGAGAAATGGCATCTCCCTGTCCAGAAAATAACAATGGAGAAGTTAGAAGTGAAGTTCAGAAGGATAGCACTTCTGAACAAGTTGACGGGATATCTGAGCAGGCAGAGAACGTGACAGGATCTCAGTTAAGGGATGATGTAAATGTGCCTAAGGAACAAAGTGACGATGCAAATGTCTGTGGAGGTGGCAATGACATTCCTGGGGATAGTACCTGCCCATGCCCTCAAACCAGTGATATGACATCTCGTTCAGAAAACAACAATGCAGAAGTTGTAAGTGAAGTTCAGAATGGTAATTCTTCTGAAAATGGCAACACTTCCATGCAACAGTTCAAAAATGTTGTTGCCATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTAATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTATATATCCTGCAATCCTGAAACTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCGGCAAAAATTCAGAAAGGTAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCACAGAGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2577 0.4529 MAEPVANTQLSPSKTLDSTNGHDSTMEPNQMLPQDAQLNQENDGVVSTGKRSREDDDGEERSLHPMWKTSLCSYYRSHNNTCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETDEKCAASEDVMMTEAVVDGDDIDSNHAFSKCLVHLPRRWCSEDLRNFLSQQGIAFKYAKKKNGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVLNTNNDKLTGDGSVGKTRNLRDVVTPLAHIPYADQLEQKKTSLMQILKKLTRNARKACPDGVSLPEWILNSREIGGLPCKLEGIIASPIVDGYRNKCEFSVGYSLKGNVTVGFMLGNFREGVTAVEEATECPNVSTIASKYVTMFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGNTDHAETFGGIAEVMLIVQVSTANFDDALVAAEFKRLALAFVAGATSHCPTLPLTALFVQDHQGISNVAPADAPLHLLPLPKAGGDPEIDENNNAMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKQDDSNTPKSGYDIPEDSACPEAENGEMASPCPENNNGEVRSEVQKDSTSEQVDGISEQAENVTGSQLRDDVNVPKEQSDDANVCGGGNDIPGDSTCPCPQTSDMTSRSENNNAEVVSEVQNGNSSENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPETLVANAIELCTPSPAKIQKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01954 858 MobiDBLite consensus disorder prediction 47 62 - -
Viun11g01954 858 MobiDBLite consensus disorder prediction 610 721 - -
Viun11g01954 858 ProSiteProfiles Zinc finger C3H1-type profile. 66 95 IPR000571 GO:0046872
Viun11g01954 858 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 242 858 IPR010280 GO:0006396|GO:0008173
Viun11g01954 858 CDD AdoMet_MTases 542 596 - -
Viun11g01954 858 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 94 IPR000571 GO:0046872
Viun11g01954 858 MobiDBLite consensus disorder prediction 658 681 - -
Viun11g01954 858 Pfam Methyltransferase domain 540 598 IPR025714 -
Viun11g01954 858 Gene3D - 151 220 IPR012677 -
Viun11g01954 858 MobiDBLite consensus disorder prediction 1 46 - -
Viun11g01954 858 Gene3D - 58 100 - -
Viun11g01954 858 Coils Coil 252 272 - -
Viun11g01954 858 ProSitePatterns RNA methyltransferase trmA family signature 1. 753 785 IPR030390 -
Viun11g01954 858 Gene3D Vaccinia Virus protein VP39 513 614 IPR029063 -
Viun11g01954 858 MobiDBLite consensus disorder prediction 704 721 - -
Viun11g01954 858 Gene3D Vaccinia Virus protein VP39 714 858 IPR029063 -
Viun11g01954 858 Pfam tRNA (Uracil-5-)-methyltransferase 742 793 IPR010280 GO:0006396|GO:0008173
Viun11g01954 858 SMART c3hfinal6 66 94 IPR000571 GO:0046872
Viun11g01954 858 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 245 858 IPR029063 -
Viun11g01954 858 SUPERFAMILY CCCH zinc finger 64 99 IPR036855 GO:0046872
Viun11g01954 858 SUPERFAMILY RNA-binding domain, RBD 154 222 IPR035979 GO:0003676
Viun11g01954 858 MobiDBLite consensus disorder prediction 1 62 - -
Viun11g01954 858 Gene3D - 313 512 - -
Viun11g01954 858 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 83 858 IPR045850 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g01954 tRNA_U5-meth_tr 1.3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01954 K15332 - gmx:100777601 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01954 11 35280497 35285800 Viun11g01954 11 35280497 35285800 ECH