Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01953 ATGAGTACAGAGGAAAAGCCTGTGAATGAGGAACATGACGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACATCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTCAGTTCTCGCTCTGTTGATCCTCCTACATATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGTACACCAGCAGCAGATGTTGAAAAGGCAAATACTGCGGCTTCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAACTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAGATGTATTGGTAGACACTTCGACAAATGATACTGAAAATGAAGACGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATTTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGCGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGAAACCTACCTGTCACTCTATTGCGGATCCAAAGTGTTCGAAATCGAAATAATGGTGCAACTAGGTCTCAGCTGGAAGATGCAGCTGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTTGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTGGTGCAATAGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTATGGTGGTTCTCTTTGCGCATATTTTTTACTCCGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTCTATAGATGGAGAAGAAGATCACAGGCTTCATCAGAGCAGCGACAAGGCCCTCAATTGATGCCACAAACAGGACAAAATCCACAATCTTCAAACACTCCTAATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAACCTGTGGTGCAAAATGAACATAACTCAAATCAGAGTTGA 1551 0.43 MSTEEKPVNEEHDAGSCRRTVSLPVQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTYNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVEKANTAASEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKNLRRMDSFFRIVPSTPRVKEGDVLVDTSTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGATRSQLEDAAGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFAMVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRSQASSEQRQGPQLMPQTGQNPQSSNTPNSDSGSGPSNHSQPVVQNEHNSNQS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01953 516 MobiDBLite consensus disorder prediction 1 17 - -
Viun11g01953 516 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Viun11g01953 516 MobiDBLite consensus disorder prediction 53 71 - -
Viun11g01953 516 MobiDBLite consensus disorder prediction 468 516 - -
Viun11g01953 516 MobiDBLite consensus disorder prediction 1 110 - -
Viun11g01953 516 SMART ringv_2 263 312 IPR011016 GO:0008270
Viun11g01953 516 MobiDBLite consensus disorder prediction 79 110 - -
Viun11g01953 516 PANTHER OS02G0165000 PROTEIN 23 476 - -
Viun11g01953 516 MobiDBLite consensus disorder prediction 172 188 - -
Viun11g01953 516 MobiDBLite consensus disorder prediction 171 211 - -
Viun11g01953 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Viun11g01953 516 CDD RING_CH-C4HC3_MARCH 264 312 - -
Viun11g01953 516 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Viun11g01953 516 SUPERFAMILY RING/U-box 260 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01953 Viun-Chr11 35259091 35269265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01953 261 367 C3H Transcription Factor Family AT2G37950 35.965 2.68e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01953 - - gmx:100815566 885.174