Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01942 ATGGCTCAAGATGTTGAGGTTCAAGAGGAAGAAGAAGAATACCCCGAAAAAGACTATAATGACCCTCCTCCAGCACCCTTGTTCGACCTCGAAGAGCTCGCACATTGGTCCTTCTATAGAGCCATTATCGCCGAGTTCATAGCAACCCTTCTCTTCCTCTATGTCACTGTGCAGACCATAATTGGCAACAAAAGACAGATCGATGCCAATATTAATGGCATCGAATGTGATGGGGTTGGCATTCTCGGCATCGCTTGGACCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCCAGTATTTCAGGAGGACACATAAACCCAGCTGTGACATTCGGGTTGTTCCTAGGACGCAAGGTGTCCTTGATAAGGGCGTTGTTGTACATATTAGCACAGTGTGCTGGTGCAATTTGTGGCACTGGACTAGCGAAGGGGTTCCAAAAGGCATATTTCAACAGGTATGGAGGTGGTGCTAACTCTGTTGCTGATGGCTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAAGAACGCTAGAGACTCCTATATTCCTGTTCTAGCACCACTCCCCATTGGGTTTGCTGTGTTTGTGGTTCATTTGGCTACAATCCCAGTTACTGGCACCGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACCAAAAAATCTGGGATGATCAGTGGATATTCTGGGTTGGTCCAATTGTTGGAGCAGCAGTGGCTGCATTATACCACCAATACATCCTTAGAGCAGCGGCTATCAAGGCTCTTGGACCATTCAGGAGACATGTTTAG 861 0.4715 MAQDVEVQEEEEEYPEKDYNDPPPAPLFDLEELAHWSFYRAIIAEFIATLLFLYVTVQTIIGNKRQIDANINGIECDGVGILGIAWTFGGMIFILVYCTASISGGHINPAVTFGLFLGRKVSLIRALLYILAQCAGAICGTGLAKGFQKAYFNRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKKNARDSYIPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIYNDQKIWDDQWIFWVGPIVGAAVAALYHQYILRAAAIKALGPFRRHV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01942 286 MobiDBLite consensus disorder prediction 1 21 - -
Viun11g01942 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Viun11g01942 286 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 MobiDBLite consensus disorder prediction 1 17 - -
Viun11g01942 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 275 IPR034294 -
Viun11g01942 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Viun11g01942 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 FunFam Probable aquaporin PIP1-2 25 286 - -
Viun11g01942 286 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Viun11g01942 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun11g01942 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01942 Viun-Chr11 35224991 35226126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01942 1 282 Major Intrinsic Protein MIP AT5G60660 75.532 2.04e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01942 K09872 - gmx:100811119 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03398 5 44235716 44237373 Viun11g01942 11 35224991 35226126 PCT