Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01931 ATGAAGGAGGGAGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCGAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCGGAACACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAAGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTGAGTCTGGTTCCTCTCAGAAACTCGGAACTCGGTCCCGACTCGGAGGGGGGTGCTGACGTGGCGGAGGCATCGGAGAAGCCCGCGTCTTTCGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCAAGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCCGGGGATTCTGTGGTGTTTCTGAGGTCCGAGAATGGAGAGTTGTGTGTCGGGATTCGGAGGGCAAAGAAGGGAATTGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTACGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGTGGTAGTGGCAGGGCCAAAGTAAGGCCTGAAGCTGTTGTTGAAGCAGTGACACTGGCTGCTGCCAACAAACCTTTTGAGGTTGTTTACTATCCAAGAGCCAGTACTCCTGAGTTTTGCATCAAGGCTTCTTCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACCGAGGATGCTTCCAGAATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCGAGAAAGAAGCTGCGGTTTCCGCAGCAGCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGGAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGACAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTCTCAGATCTCCACCTTAACAGTAAACTGCAGCTGGGGTTGCTTCCATCTAATATCCAGCAACATGGATTCTATAGTGGGATTTCAAGTGGTAACACCACCAACCATGATAAGAGCAAAGAAAGCTTGTCACACTTGCTCACCATAGGCAAATCTACCAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAGCCGATACTCACTGAGCAACAGATTTCTAGAGATGTGTTGTCTCGTGCCAAAAAATCATCGGATGATGTCAAAGACAAAGAGAAGTGCTTTCTGGATGATTCCCAACCTTCACTCTTTTCATCAGGGAAAGCCTCTGCTGCTGAATTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTACGAAGAACTCTATAGAAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTATGTGTTTTACTATGATGCTAAAGGTGCTGTTAAGCAAACCGGAGAAGAACCCTTCAGTGACTTCATGAAAACAGCGAAAAGGTTGACAATTCTGACTGATTCAGGCAGCAAAAACGTTACAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTTGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2076 0.4966 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGPDSEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQQPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIQQHGFYSGISSGNTTNHDKSKESLSHLLTIGKSTKSLEKSDDVKKHQFLLFGQPILTEQQISRDVLSRAKKSSDDVKDKEKCFLDDSQPSLFSSGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVTRAFITGTRNGEHGLDASNKTGPLSIFA 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01931 691 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Viun11g01931 691 Gene3D - 103 207 IPR015300 -
Viun11g01931 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 660 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun11g01931 691 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Viun11g01931 691 CDD B3_DNA 104 205 IPR003340 GO:0003677
Viun11g01931 691 Gene3D - 578 664 - -
Viun11g01931 691 FunFam Auxin response factor 103 207 - -
Viun11g01931 691 Gene3D - 312 384 - -
Viun11g01931 691 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun11g01931 691 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Viun11g01931 691 MobiDBLite consensus disorder prediction 83 102 - -
Viun11g01931 691 ProSiteProfiles PB1 domain profile. 579 659 IPR000270 GO:0005515
Viun11g01931 691 SMART B3_2 105 207 IPR003340 GO:0003677
Viun11g01931 691 FunFam Auxin response factor 312 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01931 Viun-Chr11 35101660 35104984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01931 3 665 B3 DNA Binding Superfamily AT2G28350 57.872 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun11g01931 B3 1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01931 - - gmx:100814686 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03393 5 44141914 44145145 Viun11g01931 11 35101660 35104984 PCT