Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01927 ATGAAGGACTGGTTGTTTTTTGACAAAAACTTCAATGGTTTGTCGAACGACATACTCGATGATGTCATGGACATCGAGCTTTTCGATTTCCCCCTCGAAGACGTGGAAACTGATGATGGTGCGGAACAAGATTGGAATGCTCACTTCAAATTCCTTGAAGAGCCTTCACTGGGAATTTTTCCTGTACAACCGTCTCAGCACTGTGCTCATACTCAAAATGAGAATGTGAAAGTGGAAAGAGGTTTCTCTGTTTCTACAGCAAAGAAAGCGGGTCCTACATACAACAAAAATGTTCCTATCCAGAAAGATTTGCACCAATTTCAAAGTAACAGCCCAGTTTCTGTCTTTGAAAGCAGTAGCAGTAGTTCTTGTGTTGAGAACTCTAACTTGGAGTTACCTGTTATCCCAACAAAGCGTCCACGAAGCAAACGCAGGCCTCTCTCAAACATCACCCTGCTATACTCCATTCCTTTCATCTTTACTTCACCGGCGTTTCAAAAATCAGATTTTGAAACACACCCATTTGAGAAATTTTCAAACGTGGTAAGAAAGCAGAGGAAAAAGAACATTCCCATGGTAGGTAACAAAACTGAGATGAAGAGATCCTCATCAGAGGAATTCGTTGCAGTCAGAAAATGCTCGCATTGTGAGGTGACAAAGACACCGCAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAACGCTTGTGGAGTTCGTTACCGCTCTGGCAGGCTCTTTGCTGAATACCGTCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCTAACTCCCACAAGAAGGTCTTAGAAATTAGGAACAGAGACACCCATGTCACAGTTAGATAA 855 0.4339 MKDWLFFDKNFNGLSNDILDDVMDIELFDFPLEDVETDDGAEQDWNAHFKFLEEPSLGIFPVQPSQHCAHTQNENVKVERGFSVSTAKKAGPTYNKNVPIQKDLHQFQSNSPVSVFESSSSSSCVENSNLELPVIPTKRPRSKRRPLSNITLLYSIPFIFTSPAFQKSDFETHPFEKFSNVVRKQRKKNIPMVGNKTEMKRSSSEEFVAVRKCSHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRDTHVTVR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01927 284 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355|GO:0043565
Viun11g01927 284 CDD ZnF_GATA 212 259 IPR000679 GO:0006355|GO:0043565
Viun11g01927 284 Gene3D - 209 257 IPR013088 GO:0006355|GO:0008270
Viun11g01927 284 SMART GATA_3 207 257 IPR000679 GO:0006355|GO:0043565
Viun11g01927 284 PANTHER GATA TRANSCRIPTION FACTOR 40 277 - -
Viun11g01927 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 269 - -
Viun11g01927 284 FunFam GATA transcription factor 200 284 - -
Viun11g01927 284 Pfam GATA zinc finger 213 246 IPR000679 GO:0006355|GO:0043565
Viun11g01927 284 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01927 Viun-Chr11 35080718 35087445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01927 8 278 C2C2-Gata Transcription Factor Family AT1G08010 38.889 1.23e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun11g01927 GATA 4.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01927 - - gmx:100781869 366.311