Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01898 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAATAGTTCCCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCAGAACCACGCCACTTGGGTGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACCCCAACAACAGCAACAGCAACACCTTCTTCTCTTCTGAGCTTAATAACAATGCTTCTGGTGAAATGCATTACCCTCCCTCTTCGTCTGCTTCGCCTCCTCTTTACCATAATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCCGAGCCTGTGCTTCATTATCAAGCGAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAACAGTACCGCAGCAATGGGTTTCAAGAAGAATAACGAACAAGACATAAATCCTCATCAGGGTTTATCACTGTCACTTTCATCAAACTCACAATCGAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACTCAATATTCAAAGTCATTGAAGTCGTCCATGAAGTTGAACGCGCTTTCAAACAATACTGTTTATCGAAACGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCGAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGATCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTGCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCATCTATTTCTGCAGCTGCTAGTGATGCTCTTAATGTTGATGAAAGTGGAGGTGCTGCAAAAGGTGTTAGCAATCTGGGTGCTTCATCCTCCGTGTTGTATAATTCAAATGAAAATGATAATGCAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTCAATCATTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTGAAGTCAGTATCGAAACACTTCAGGTACTTAAAAAGTGCTATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCAATGCCAACCACAAGTAATGGTGGTAAATTTGACAGTAACATGGCAAGGCTACGGTGCATCGATCAAAGTTTTCAAAAAAACAAATCTTTGGGGGGTAACATAAACTTTCTTGAGCCCCAACAACACGTGTGGAGGCCCCAGAGAGGCTTACCAGAAAGATCAGTGGCAATTCTTAAAGCTTGGCTCTTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCGAGAAACCAGGTATCAAACTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAGCAGAAGCGCACCACCAAGGCTCTAATAAAAGTGACCAGGTAGCTTCTGCATGTGAAGGTAGTAGCAACCAACCCAAATCAGATCAACCTGTGAGCAGGTTTCACACACATGCAATCCCTGAAAAGCAGTTTCAGTGTTTGGAAATGGGGTCATCATCTTCAGCAGGAGGCAATGAGGAACACATTGGGATGAATGAGGAGCAATGGAATCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGAGGGCACTGTGATGGGGTTTATGCCCTACAGAAGAGGTGCACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACCTTGGGGCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAGCAAGAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2190 0.4566 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPEPRHLGANWMVNYNESNPNPNNSNSNTFFSSELNNNASGEMHYPPSSSASPPLYHNALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSTAAMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNALSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVAEWVSRDVSAASISAAASDALNVDESGGAAKGVSNLGASSSVLYNSNENDNANSADGGATSNFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRYLKSAISDQLKLTCEVLGEDFSMPTTSNGGKFDSNMARLRCIDQSFQKNKSLGGNINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAAEAHHQGSNKSDQVASACEGSSNQPKSDQPVSRFHTHAIPEKQFQCLEMGSSSSAGGNEEHIGMNEEQWNQEKRSKLECQIAATPNMEGTVMGFMPYRRGALEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEELRRQFGGHMIHDFVG 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01898 729 MobiDBLite consensus disorder prediction 117 140 - -
Viun11g01898 729 SMART prehox3 276 450 IPR006563 -
Viun11g01898 729 SMART HOX_1 508 572 IPR001356 GO:0003677
Viun11g01898 729 MobiDBLite consensus disorder prediction 211 248 - -
Viun11g01898 729 FunFam BEL1-like homeodomain protein 9 511 573 - -
Viun11g01898 729 Pfam Associated with HOX 281 449 IPR006563 -
Viun11g01898 729 ProSiteProfiles 'Homeobox' domain profile. 505 568 IPR001356 GO:0003677
Viun11g01898 729 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 148 593 - -
Viun11g01898 729 SUPERFAMILY Homeodomain-like 510 574 IPR009057 -
Viun11g01898 729 MobiDBLite consensus disorder prediction 581 612 - -
Viun11g01898 729 Pfam Homeobox KN domain 525 564 IPR008422 GO:0003677|GO:0006355
Viun11g01898 729 CDD homeodomain 508 569 IPR001356 GO:0003677
Viun11g01898 729 Gene3D - 511 573 - -
Viun11g01898 729 MobiDBLite consensus disorder prediction 587 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01898 Viun-Chr11 34895059 34901285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01898 301 577 Homeobox Transcription Factor Family AT4G34610 45.161 2.06e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun11g01898 POX 3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01898 - - vum:124831694 1274.23