Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01894 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAATAGTTCCCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCAGAACCACGCCACTTGGGTGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACCCCAACAACAGCAACAGCAACACCTTCTTCTCTTCTGAGCTTAATAACAATGCTTCTGGTGAAATGCATTACCCTCCCTCTTCGTCTGCTTCGCCTCCTCTTTACCATAATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCCGAGCCTGTGCTTCATTATCAAGCGAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAACAGTACCGCAGCAATGGGTTTCAAGAAGAATAACGAACAAGACATAAATCCTCATCAGGGTTTATCACTGTCACTTTCATCAAACTCACAATCGAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACTCAATATTCAAAGTCATTGAAGTCGTCCATGAAGTTGAACGCGCTTTCAAACAATACTGTTTATCGAAACGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCGAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGATCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTGCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCATCTATTTCTGCAGCTGCTAGTGATGCTCTTAATGTTGATGAAAGTGGAGGTGCTGCAAAAGGTGTTAGCAATCTGGGTGCTTCATCCTCCGTGTTGTATAATTCAAATGAAAATGATAATGCAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTCAATCATTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTGAAGTCAGTATCGAAACACTTCAGTAACATGGCAAGGCTACGGTGCATCGATCAAAGTTTTCAAAAAAACAAATCTTTGGGGGGTAACATAAACTTTCTTGAGCCCCAACAACACGTGTGGAGGCCCCAGAGAGGCTTACCAGAAAGATCAGTGGCAATTCTTAAAGCTTGGCTCTTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCGAGAAACCAGGTATCAAACTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAGCAGAAGCGCACCACCAAGGCTCTAATAAAAGTGACCAGGTAGCTTCTGCATGTGAAGGTAGTAGCAACCAACCCAAATCAGATCAACCTGTGAGCAGGTTTCACACACATGCAATCCCTGAAAAGCAGTTTCAGTGTTTGGAAATGGGGTCATCATCTTCAGCAGGAGGCAATGAGGAACACATTGGGATGAATGAGGAGCAATGGAATCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGAGGGCACTGTGATGGGGTTTATGCCCTACAGAAGAGGTGCACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACCTTGGGGCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAGCAAGAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2088 0.4598 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPEPRHLGANWMVNYNESNPNPNNSNSNTFFSSELNNNASGEMHYPPSSSASPPLYHNALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSTAAMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNALSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVAEWVSRDVSAASISAAASDALNVDESGGAAKGVSNLGASSSVLYNSNENDNANSADGGATSNFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFSNMARLRCIDQSFQKNKSLGGNINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAAEAHHQGSNKSDQVASACEGSSNQPKSDQPVSRFHTHAIPEKQFQCLEMGSSSSAGGNEEHIGMNEEQWNQEKRSKLECQIAATPNMEGTVMGFMPYRRGALEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEELRRQFGGHMIHDFVG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01894 695 SMART HOX_1 474 538 IPR001356 GO:0003677
Viun11g01894 695 Gene3D - 477 539 - -
Viun11g01894 695 MobiDBLite consensus disorder prediction 117 140 - -
Viun11g01894 695 ProSiteProfiles 'Homeobox' domain profile. 471 534 IPR001356 GO:0003677
Viun11g01894 695 FunFam BEL1-like homeodomain protein 9 477 539 - -
Viun11g01894 695 Pfam Associated with HOX 281 443 IPR006563 -
Viun11g01894 695 MobiDBLite consensus disorder prediction 553 578 - -
Viun11g01894 695 MobiDBLite consensus disorder prediction 211 248 - -
Viun11g01894 695 CDD homeodomain 474 535 IPR001356 GO:0003677
Viun11g01894 695 MobiDBLite consensus disorder prediction 547 578 - -
Viun11g01894 695 Pfam Homeobox KN domain 491 530 IPR008422 GO:0003677|GO:0006355
Viun11g01894 695 SUPERFAMILY Homeodomain-like 476 540 IPR009057 -
Viun11g01894 695 SMART prehox3 276 446 IPR006563 -
Viun11g01894 695 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01894 Viun-Chr11 34894916 34901651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01894 301 543 Homeobox Transcription Factor Family AT4G34610 41.818 1.48e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun11g01894 POX 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01894 - - vum:124831694 1195.65