Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01890 ATGATGATGAATCTTCCTAACCAGACAAGGAAGGTTCCTTTTGTAACATTTGTTGTATTAATAAGCTTCGTTGTGGGGCCAAAGCTAGTTTTTGGCCAGAGTAGTACCGGAGGAAGCGCTGGAGGTGGTAGTGCCGGTGGTGCTGGCCTTGAGATATTCGCCCAAGAAGTATATCGTGGCATGTCCAATTATACAACTGTGTTCAAGAAAGTAATAAAACAAGAGTTGGGTTATTGCGTAATTGATGTGGACGCTGATTGGAATGGGGCATTCAATTTCAGCAAAGATCTCACCTTTTTGACCATCTGTGCCCAGCAAATGAAAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACTAGCTTATGGCCAAAGTTTTAGTGGGAAGTCAAGATCCAACTTCTTGAAGCCCAACATAAATTGTAATTTGACCTCATGGGTTAATGGTTGTGAACCTGGATGGGGTTGTAAAGCTAATCAGAAAGTAGATGTTGACAGTACCAAGAAAGATATACCTGTTAGATCTGTAGATTGCCTACCTTGTTGTGAAGGGTTCTTTTGCCCTCGTGGTCTCACTTGCATGATACCTTGTCCATTGGGGTCTTATTGTCCTCTTGCACAACTCAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATCTGGGCAGATATTACGAGTAGCAGTGAGGTATTCTGCTCATCAGGGTCCTTTTGTCCCTCTACAATAGTAAAAAATCCTTGCAATAAGGGGTATTATTGCAGAACAGGTTCTACTTCTCCAGAGCGGTGTTTCAAATTGGCAACTTGTGAGCCTAATTCAGCGAATCAAAATATTACTGCATATGGTGTCTTGATTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAATACACGAGAGAGGGCTGTTCAAAGTGTGAGGGAATCCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTAGGACTACAATCGCAACTATCACGTACATTTTCACGCAAAACTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTTCTATACCACCTATTGGTAAAGGCAAGAAAAAGGATAAAAACAATCTCTCAAAAATACTAAATGATATTGAGCAAAACCCCGATAATCCAGAGGGCTTTAATGTTCAGATAGGAGATAAAAATGCGAAAAAGCAAGCACCAAGGGGCAAACAATTGCATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAGGAAAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGACATTGAGATTAGGAAGAGGCCTACCATTGAAGTTGCTTTTAAAGATTTGACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTAACCGGTAAACTATACCCTGGTAGAGTTTCAGCTGTCATGGGCCCATCTGGGGCTGGCAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGTCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCTAGATGCAGACTCCCTGCTGATCTACCAAAAGAAGAAAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTTGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAGAGAGTGAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTACTTCTTAGAGCACTTAGACGTGAAGCTCTTGAAGGTGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTGCTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGCATTAATGTCCCCGATCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGTTTAGGAGTGACCTACAAACAACTACCTGTGAGATGGATGCTTCATAATGGGTACCCTGTGCCCATGGATATGCTACAGAGTGTTGAAGGAATGTCAGCCCCAAGTGGTGAAGGCTCATCAAGTGGAGCAGCAGCTGGTGGAGAAGAAGAGGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCACATGATCTGTCCAATCGGGTTACACCTGGAGTGTTCAACCAATACAAGTACTTTCTTGGAAGAGTTGGTAAGCAAAGACTAAGAGAAGCTAGAACACAGGCTGTTGATTTCTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGTACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACAGTAATAGCACACTCCTTTCTAAGATTGCGGCATTGA 2739 0.41 MMMNLPNQTRKVPFVTFVVLISFVVGPKLVFGQSSTGGSAGGGSAGGAGLEIFAQEVYRGMSNYTTVFKKVIKQELGYCVIDVDADWNGAFNFSKDLTFLTICAQQMKGDITQRMCTEAEILAYGQSFSGKSRSNFLKPNINCNLTSWVNGCEPGWGCKANQKVDVDSTKKDIPVRSVDCLPCCEGFFCPRGLTCMIPCPLGSYCPLAQLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADITSSSEVFCSSGSFCPSTIVKNPCNKGYYCRTGSTSPERCFKLATCEPNSANQNITAYGVLIFAGLCFLLIIIYNCSDQVLATRERRQANTRERAVQSVRESQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPELKGFGSKHSDSSIPPIGKGKKKDKNNLSKILNDIEQNPDNPEGFNVQIGDKNAKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMSAPSGEGSSSGAAAGGEEEAPSFAGELWQDVKCNVEMKKDILHINFLASHDLSNRVTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAHSFLRLRH 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01890 912 SMART AAA_5 518 719 IPR003593 GO:0016887
Viun11g01890 912 ProSitePatterns ABC transporters family signature. 633 647 IPR017871 GO:0005524|GO:0016887
Viun11g01890 912 MobiDBLite consensus disorder prediction 366 404 - -
Viun11g01890 912 FunFam ABC transporter G family member 24 486 728 - -
Viun11g01890 912 Pfam ABC-2 type transporter 690 908 IPR043926 GO:0140359
Viun11g01890 912 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 445 905 - -
Viun11g01890 912 Pfam ABC transporter 512 661 IPR003439 GO:0005524
Viun11g01890 912 Gene3D - 481 732 IPR027417 -
Viun11g01890 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 729 IPR027417 -
Viun11g01890 912 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 492 733 IPR003439 GO:0005524
Viun11g01890 912 CDD ABCG_EPDR 490 716 - -
Viun11g01890 912 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01890 Viun-Chr11 34862667 34868305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01890 481 693 Calmodulin-binding Proteins AT2G36910 27.273 8.50e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01890 - - gmx:100809312 1568.13