Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01888 ATGGCTTCTAAAACCCCAGTTCCTCACAAACCCAGCAACACAAAGCTACCACCTCTTAGGGCAAAGAAAGATCGACACACGAAGGTGAATGGCAGAGAAAGACGTGTTCTTTTGCCACCTTTGTGTGCTGCTCGAATCTTCCAACTCACTCGTGAGTTAGGTTACAAGACTCACGGAGAAACCATAGGGTGGCTTCTGCGCCAGGCGGAACCCTCCATTATTTCTGCCACTGGCACTGGTATATCACCTTCCATCGTTGATTTAACATCATCGTTGTCATCACCGTCTTCATCGTCACCACCGATATCTCAGGACAACAACAACAACGTTGTTGGTCAGCATGCAAGTTCGGTGCATGTGTCGATAGACAATGAGATCAATTCCAAAGAGACGTTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTGGAGTTTTCTGCTGCTGAGATCGAAATGCTCCAATCATTGATGACGAGGTTGGGCTGA 492 0.4614 MASKTPVPHKPSNTKLPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPSIVDLTSSLSSPSSSSPPISQDNNNNVVGQHASSVHVSIDNEINSKETFLPLDFDVFSNFNVEFSAAEIEMLQSLMTRLG 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01888 163 MobiDBLite consensus disorder prediction 89 110 - -
Viun11g01888 163 MobiDBLite consensus disorder prediction 1 29 - -
Viun11g01888 163 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 127 IPR005333 GO:0003700
Viun11g01888 163 Pfam TCP family transcription factor 21 114 IPR017887 -
Viun11g01888 163 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01888 Viun-Chr11 34859437 34859928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01888 15 84 TCP Transcription Factor Family AT3G47620 68.056 8.42e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun11g01888 TCP 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01888 - K16221 var:108322003 254.988