Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01880 ATGGGTGATATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATTGCCTCAGTGGCTTCCCCTATGGTCCCAACCGACACAACGGCAAATTTTGCTTTGCCAGTTGATTCTGAGCACAAAGCCAAGGTTTTCAAACTGTTTTCCCTGGCCAACCCCCACATGAGAACCTTCCACTTGTCTTGGATATCCTTCTTCACATGCTTTGTCTCAACTTTTGCAGCAGCTCCTCTTGTCCCCATCATTCGCGACAACCTCAACCTCACCAAAAGCGACATCGGGAATGCCGGGGTTGCTTCTGTCTCCGGCAGCATCTTCTCCAGGCTCACAATGGGTGCGGTTTGCGACCTCTTGGGTCCTCGCTATGGCTGTGCCTTCCTCATCATGCTTTCTGCGCCAACTGTGTTCTGCATGTCGTTTGTGGATGACGCTGCAGGATACATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGCCAGTACTGGATGAGTACCATGTTTAATAGTAAGATTATAGGGCTTGTGAATGGAACTGCTGCAGGGTGGGGAAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCCTTGGTCTATGAATTGATCAGAAGAGCTGGAGCTACTCCCTTCACTGCCTGGAGAATTGCCTTCTTCGTTCCAGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTGCCTGATGGCAACCTTGGAACCTTGCAGAAGAAGGGTGATGTTGCCAGAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGAACATGGATTTTTGCCCTCCTCTATGGGTACTCTATGGGAGTTGAACTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTCAATCTGAAGCTACACACTGCTGGAATCATCGCTGCTTCATTTGGAATGGCAAATATCCTGGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCGAGGTTGTTCGGCATGAGGGGCAGGCTTTGGAACCTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCACTTCCCATTGCAGTGTTGGCTATGATCCTCTTCTCTATCGGCGCTCAAGCTGCATGTGGTGCCACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCGGGTCTAACAGGTGCAGGTGGCAACTTTGGCTCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCAAAGTTTTCTACATCCACCGGTCTCTCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCTCAGTGGGGTGGCATGTTCCTCCCTCCTTCAAAAGACATCAATGAAGAATCTTACTACACTTCTGAATGGAATGAGGAAGAGAAGCAAAAGGGTTTGCACCAGAATAGTCTGAAATTTGCTGAGAATAGCCGTTCAGAAAGAGGTAAGCGTGTGGCCTCAGCCCCTACCCCACCAAACACAACTCCGACCCATATTTAG 1584 0.4874 MGDIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVDDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFVPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGDVARDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANILARPFGGYTSDVAARLFGMRGRLWNLWILQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGGMFLPPSKDINEESYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPTHI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01880 527 MobiDBLite consensus disorder prediction 486 527 - -
Viun11g01880 527 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Viun11g01880 527 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 513 IPR044772 GO:0015112
Viun11g01880 527 FunFam Nitrate transporter 2.1 265 466 - -
Viun11g01880 527 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Viun11g01880 527 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Viun11g01880 527 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Viun11g01880 527 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Viun11g01880 527 FunFam High affinity nitrate transporter 57 254 - -
Viun11g01880 527 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Viun11g01880 527 MobiDBLite consensus disorder prediction 486 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01880 Viun-Chr11 34666306 34668723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01880 1 527 Inorganic Solute Cotransporters AT1G08090 79.811 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01880 K02575 - gmx:100807710 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03355 5 43888440 43890529 Viun11g01880 11 34666306 34668723 PCT