Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01875 ATGGAGGGATTCGGAGTAAGAACCAGCAGCAGCAGAAAAATAAGGGTTGTGGGTGGTATTTTGAAGTTGAAGGGTGTGTTGGAAAAGCTTCAAAAGAGTGTCTTGTTGCGGAGACATAAATCTGGTTCCTGTGGAAGAGATTATGAAGAAGTAGGAGATGTGAAAGAAGGACATTTTGTTGTGATTGCAAAGGATAATGAGGAGGCAAAGAGATTGGTGGTTCCATTGAGCTTTTTGAAGAACTCAACATTCTTGAAGCTGTTGGAGGAAGCAGCAGAAGAATATGGGTTTGATCAACATGGTGCACTAACCATACCTTGCAGACCTAGTGAACTTGAGATGCTGTTGAATCAGTAA 357 0.4174 MEGFGVRTSSSRKIRVVGGILKLKGVLEKLQKSVLLRRHKSGSCGRDYEEVGDVKEGHFVVIAKDNEEAKRLVVPLSFLKNSTFLKLLEEAAEEYGFDQHGALTIPCRPSELEMLLNQ 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01875 118 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 38 114 IPR003676 GO:0009733
Viun11g01875 118 Pfam Auxin responsive protein 37 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01875 Viun-Chr11 34634236 34635517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01875 9 116 Calmodulin-binding Proteins AT3G43120 30.435 3.87e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01875 - K14488 vum:124826917 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01875 11 34634236 34635517 Viun11g01875 11 34634236 34635517 ECH
Viun5g03349 5 43851839 43852465 Viun11g01875 11 34634236 34635517 PCT