LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01873	ATGGTTTCCGACGCTAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCCGCCGCTAAAAGAGGTGGAAAGGCCGCCGCCGCTGCCGTCGTCGCTGCTGCATCTTCCAAAGCTGCCGATAAGGCCGCCAACGGAATCGCCGATATGCATATATCGGATCGGACCTGTACCGGAGTTCTCTGTTCACATCCTCTTTCCAGAGATATTCGAATAGAGTCTTTATCTGTTACATTCCATGGACATGATCTCATTGTTGATTCTGAACTGGAGCTTAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAATCTACACTGCTTACAGCCATTGGTCAGCGGGAACTTCCAATTCCTGAACATATGGATATCTATCACCTTACCCGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCTGCACAGGATGATGGAGGTGGTGAGTCCCTGGAACGTGTTTATGAGCGATTGGATGCCTTAGACGCAGCAACTGCAGAAAAACGTGCTGCGGAAATCTTATATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGAATTGCATTAGCTCGAGCTCTATTTATGAACCCAACCATTCTTCTACTCGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTTGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTATACTGGTAACTATGATCAATATGTTCAGACTCGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTATAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTTGGTCATGGTTCTGCAAAACTTGCTCGCCAGGCACAGAGTAAGGAGAAAACATTGGCAAAAATGGAACGTGGTGGACTTGCAGAAAAGGTGGTTAGGGACAAGGTTTTGGTTTTCCGTTTTACTGATGTTGGAAAACTTCCCCCTCCTGTTCTCCAGTTTGTTGAGGTGTCGTTTGGTTACACTCCTGATAACCTTATATACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTCGCACTGGTTGGACCCAATGGGGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGATGCCTTCTGATGGCATGGTTCGGCGTCATAATCATCTTCGGATTGCTCAATATCACCAGCATTTGGCTGAAAAGCTAGACTTGGATATGTCAGCTCTACAGTTTATGATTAAAGAATATCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCGATAGGGAAGTTTGGTCTATCAGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCGGATGGGCAGAGGAGTCGGGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCACAAATGCTTCTTTTGGATGAACCAACTAATCATTTGGATATTGAGACAATTGATTCTTTGGCTGAGGCATTGAATGAATGGGACGGTGGCTTGGTGCTTGTCAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTAATCAAAGTGTGACTAGATGGGAGGGTGGCATCATGGAATTCAAGGCGCATTTAAAGGCCAAGGCGGGTTTATCTGACTAA	1788	0.4497	MVSDASKKKAAQKKAAAAAKRGGKAAAAAVVAAASSKAADKAANGIADMHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGQRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLDALDAATAEKRAAEILYGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDLDMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGGIMEFKAHLKAKAGLSD	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01873	595	Pfam	ABC transporter	87	241	IPR003439	GO:0005524
	Viun11g01873	595	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	380	595	IPR003439	GO:0005524
	Viun11g01873	595	SMART	AAA_5	93	295	IPR003593	GO:0016887
	Viun11g01873	595	SMART	AAA_5	405	572	IPR003593	GO:0016887
	Viun11g01873	595	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	364	574	IPR027417	-
	Viun11g01873	595	FunFam	ATP-binding cassette sub-family F member 3	340	594	-	-
	Viun11g01873	595	Pfam	ABC transporter	396	527	IPR003439	GO:0005524
	Viun11g01873	595	Coils	Coil	287	307	-	-
	Viun11g01873	595	CDD	ABCF_EF-3	380	571	-	-
	Viun11g01873	595	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	62	316	IPR027417	-
	Viun11g01873	595	Pfam	ABC transporter	280	356	IPR032781	-
	Viun11g01873	595	ProSitePatterns	ABC transporters family signature.	213	227	IPR017871	GO:0005524\|GO:0016887
	Viun11g01873	595	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	15	590	-	-
	Viun11g01873	595	CDD	ABCF_EF-3	69	286	-	-
	Viun11g01873	595	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	69	309	IPR003439	GO:0005524
	Viun11g01873	595	Gene3D	-	345	593	IPR027417	-
	Viun11g01873	595	FunFam	Abc transporter f family member 1	69	333	-	-
	Viun11g01873	595	Gene3D	-	69	333	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01873	Viun-Chr11	34628191	34631757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01873	380	567	Calmodulin-binding Proteins	AT2G36910	25.688	1.87e-09	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01873	K06185		-	gmx:100809491	1083.55