Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01871 ATGAATAGATCCGGGTACGGTGGCGACGGAATATACCGGTCTCTACGACCTTCCTTGGTTCTTCCGAGGAACACCAACCTTTCACTCGTTTCGTTTCTCTTCCAAAGCGTTTCTTCTTTTTCATCTAGAACCGCTCTTGTAGATGCTGACTCTTCTCAGACCCTCTCCTTCGCTCAGCTCAAAGTCCAGGTCGCAAGGCTTGCCCATGGTTTCCTCAAACTAGGAATAAAGAAGAACGACGTCGTCCTACTCCTCGCTCCCAACTCCATTCACTTCCCTGTCTGCTTCCTTGCCGCCACGGCCATTGGAGTCATTGTCTCCACTGCCAATCCCATTTACACAGTCCACGAACTCTCTAACCAAGTCAAAGACTCCAACCCCAAGCTTGTGATCACAGTCCCTGAACTATGGGACAAAGCAAAGAAACTCAACCTCCCTGCCGTCATTCTCAGCGCCACCGACAACCTTCAGTACCCAACTAAAGACGTGTCACCGAAAATCACGAGCTTGGATGCGGTAATGGAGATGGCGGGGCCGGTGACGGAGCTGCCGGAAAGTGGGATTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCTTCGGGGACCACGGGACTGAGCAAAGGAGTTGTCCTGACACATGGGAACTTCATCGCGGCGGCAGTGATGATCGGCGTGGATGATGACCTGGCCGGAGAGGTAAACGATGTGTTCCTCTGTGTTTTGCCGATGTTCCACGTGTTCGGGCTGGTGGTTGTGACGTACACGGCGCTGCGGCGAGGGAGTGCGGTGGTGATGATGGCAAAGTTCGAGTTGGAGGCGTTTCTAAATGCGATTGAGAAACACAGAGTGACGAAGTTGTGGTTGGTGCCTCCGATTCTGCTTGCTATGGTGAAACAACAGGGTGTGGTTGGGAAGTACAATCTCTCTTCGTTGAAGCGTATAGGTTCTGGTGCTGCTCCTCTGGGGAAAGAGTTGATGGAAGAATGTGGCAAGCGTTTTCCTCATGTTGTTGTTTGTCAGGGCTATGGCATGACAGAGACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGCAGGGATTCGTCATACTGGGTCAACGGGAATGCTCGCTTCAGGAGTTGAAGCTCAAATAGTGAGTGTGGAAAAACAAAAGTCTCTCCCTCCTAAACAGTTGGGGGAAATATGGGTGCGAGGTCCAAACATGATGAAAGGTTATCACAACAATCCACAGGCCACAAGATTGACCATAGATGAAAAGGGGTGGGTGCATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGGCCTTCTCATTTCTCACCCTGAAATACTAGACGCCGTTGTTGTCCCATATCCCGATGACGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCACCCAATAGTTCACTAACTGAAGAAGAAATTAAGAAGTTTATTGCTGATCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTGTCATTCATCAGTAGTGTTCCAAAGACATCTTCAGGAAAAATCCTTAGAAGAGAGATCGCTGCAAAAGCACGATCTAAAATTTAA 1641 0.4899 MNRSGYGGDGIYRSLRPSLVLPRNTNLSLVSFLFQSVSSFSSRTALVDADSSQTLSFAQLKVQVARLAHGFLKLGIKKNDVVLLLAPNSIHFPVCFLAATAIGVIVSTANPIYTVHELSNQVKDSNPKLVITVPELWDKAKKLNLPAVILSATDNLQYPTKDVSPKITSLDAVMEMAGPVTELPESGIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAAAVMIGVDDDLAGEVNDVFLCVLPMFHVFGLVVVTYTALRRGSAVVMMAKFELEAFLNAIEKHRVTKLWLVPPILLAMVKQQGVVGKYNLSSLKRIGSGAAPLGKELMEECGKRFPHVVVCQGYGMTETCGIVSVENPRAGIRHTGSTGMLASGVEAQIVSVEKQKSLPPKQLGEIWVRGPNMMKGYHNNPQATRLTIDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIKKFIADQVAPFKKLRRVSFISSVPKTSSGKILRREIAAKARSKI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01871 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 443 - -
Viun11g01871 546 Gene3D - 9 443 IPR042099 -
Viun11g01871 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 540 - -
Viun11g01871 546 CDD 4CL 21 537 - -
Viun11g01871 546 Pfam AMP-binding enzyme 35 448 IPR000873 -
Viun11g01871 546 Gene3D - 444 545 IPR045851 -
Viun11g01871 546 SUPERFAMILY Acetyl-CoA synthetase-like 22 544 - -
Viun11g01871 546 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Viun11g01871 546 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Viun11g01871 546 FunFam 4-coumarate--CoA ligase 2 444 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01871 Viun-Chr11 34590422 34593450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01871 1 546 Monolignol Biosynthesis Gene Families AT4G05160 68.864 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01871 K01904 - gmx:100808944 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03346 5 43812847 43816336 Viun11g01871 11 34590422 34593450 PCT