Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01868 ATGGGAAGAGCTCCATGTTGTGACAAAGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAGCTAAAGGACTACATAGAGAAAAATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGGGAAGAGTTGCAGATTGAGATGGCTCAACTATCTCAGACCCAACATTAAGCATGGAGATTTCTCGGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGAACAGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGGTTGCTTCCTCTTTCCCATCACACAAAACAACCTTCATTTCCATCATCTAACCTTCAAAACCCTTCTCCTTCGTCTCACCAACTGTACGGAGAGTACGGCACCTACATCCCAGTCACAGGCATGGAACATCTCGTTACCCTTCCTTATGAAAGCACAACAACCTCAGTTTCTCAAACCTTGTACCAAAACCAAGACAACATGGGCGGCGTTAATCCCATGCAATGCTATTACCCTGTGAGTGATAGCATGGTGATGTTTGGAAGCGAAGGAAGTTGCAGTTCCTCCGACGGAAGCTGCACACAGGGAAGAGAAATGAAGCAAGAAGAAATCGGGTACCACAGCTACAATAACCATAACTTGATGCTGAGTTACAACACTAACGATGGAGATAAATCATCATGTGTGGGAGGGTTGTTGGGGCAAACGCTAACAGCGTTGGATTATGATCTTGAGGATATTAAGCAACTGATTAGTAGCAGTAGCAGCAGTTTGAATAATAATAATAATAATAATGTTGATGAAAACAAGGGAGAAGAGAAGGCGATGTACTGCTGCTACTACTAG 921 0.4311 MGRAPCCDKASVKKGPWSPEEDTKLKDYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHHTKQPSFPSSNLQNPSPSSHQLYGEYGTYIPVTGMEHLVTLPYESTTTSVSQTLYQNQDNMGGVNPMQCYYPVSDSMVMFGSEGSCSSSDGSCTQGREMKQEEIGYHSYNNHNLMLSYNTNDGDKSSCVGGLLGQTLTALDYDLEDIKQLISSSSSSLNNNNNNNVDENKGEEKAMYCCYY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01868 306 SMART sant 13 64 IPR001005 -
Viun11g01868 306 SMART sant 67 115 IPR001005 -
Viun11g01868 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun11g01868 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun11g01868 306 FunFam Transcription factor MYB36 70 139 - -
Viun11g01868 306 Gene3D - 7 68 - -
Viun11g01868 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun11g01868 306 CDD SANT 71 111 IPR001005 -
Viun11g01868 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun11g01868 306 FunFam Transcription factor RAX3 7 68 - -
Viun11g01868 306 CDD SANT 16 62 IPR001005 -
Viun11g01868 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun11g01868 306 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun11g01868 306 Gene3D - 69 141 - -
Viun11g01868 306 PANTHER OS09G0431300 PROTEIN 1 288 - -
Viun11g01868 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01868 Viun-Chr11 34574619 34576412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01868 1 119 MYB Transcription Factor Family AT5G57620 90.756 7.39e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01868 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01868 K09422 - gmx:100779919 420.239