Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01853 ATGCTCGCATTGCATTTTCGATCCTCTTTTCGTCTTTCCTTCTGTTTCTCTCGAACTGTTAGGGTTTCTTCTCTCGTCTCTTTCCCTCTATCTCTGTCCTCCGTCCCTCTCCGCGCCATGTCCAAGCCACCTTCCGCCTTCGACGCTCTCATGTCCGCCGCCAAGAAGAATTCCAAATCCAAAACACCGAAGCTTCCATCATCTCCAAAGAAAAGAAAATCTTCACTCTCCACTTCACAAAACCCTAGCAACCCCAAATCCCCCAAACTGCCTTCTCCGGCAATAACCGTTGAACCGGAGCAAGCAGTTAAACAAGAAGTTGTTAAACCAGAAGCTGTTAAACCAGAAGCTGTTAAAGCGGAAGAAGCCGTTAAGGCGGAACCGAAGAAGGTACGTCAACTGTCGTCGTCTTCTTCGAACGGGAAGACCGAGGAGCTGAAGAAGCTAGTGCCGCGGCTGAAGCAGAAGCCTTCCAGTTTTGATCCCGCTTCGATGATTGCATGGGAGAAGGGACAGCCCGTGCCGTTTCTCTTTCTCGCCTTGGCATTCGATATGATTTCTCAGGAAAGTGGAAGAATCGTTATCACTGACATTGTTTGCAATGTGCTGCGGACTGTGATGCTGGCCACGCCGGAGGATCTTGTTCCCGTCGTTTACCTCTCCGCAAACCGGATTGCGCCTGCTCATGAAGGGCTGGAACTGGGAATCGGCGACTCGATCATTTCCAAGGCGCTCGCGGAGGCTTATGGAAGGAACGAGAATTGGATTAAGGCTCAGTATCAGAAAAAAGGTGATTTGGGCTTGGTTGCTAAAGAGTGCCGTTCGTCTCAACCTATGATGTGGAAACCTGAAGCATTAACCATCAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAATCGTATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTTCAGACAAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCACTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCAGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTACGACAAAATAATATCTGCACTTCTTACTGAGGGTCTATGGAAGCTTCAAAAGAATTGTAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTTTCAAAGGCAGCAAAAAGTGTAACTGAAATTCTGAACAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTAAAAGGTTGAAGAAAGCAAATGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGCACAACACAAAAGCTTCTTTCTTTCCAGACCCTTAGTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGTGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTGAGAGTCCGCAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAGACTTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGGTTAATTATTAAAACACTAAATGAGGAGGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAATTGAAGAAAGATTATATGGACAATCTAGGGGACTCTGTAGACTTGGTACCTATTGCTGCTTTCCACGGACGTGGAAAACGTACAGGAGTTTATGGTGCCTTCGTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGGTTCACTGAAGCTGAGCTTATAGAATGTTCCACCAGTCTTGGTTCTCAAGTGATTTCCAAGCCAAAGTCATACTATAGATTCGGAGAAACTATGAATCCCGACGTATGGTTTGAAGCCAGTAAGGTGTGGGAGGTGAAAGCGGCAGACCTGACCATTAGCCCCGTCTACCGTGCTGCAGCGGGCATAGTAGATCCGAACAAGGGCATCTCTCTACGATTTCCACGACTGATTCGAGTCCGGCATGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGATTGCTGAGTTGTATAAAGCTCAAAAACACAATCAAGCGAACAAACAAGATGCCGAAGATGAAGAAGATTATTGA 2376 0.4423 MLALHFRSSFRLSFCFSRTVRVSSLVSFPLSLSSVPLRAMSKPPSAFDALMSAAKKNSKSKTPKLPSSPKKRKSSLSTSQNPSNPKSPKLPSPAITVEPEQAVKQEVVKPEAVKPEAVKAEEAVKAEPKKVRQLSSSSSNGKTEELKKLVPRLKQKPSSFDPASMIAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNVLRTVMLATPEDLVPVVYLSANRIAPAHEGLELGIGDSIISKALAEAYGRNENWIKAQYQKKGDLGLVAKECRSSQPMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWKLQKNCKFTPGVPIRPMLSKAAKSVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVKRLKKANVSSFILDCEIVAYDRTTQKLLSFQTLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQTFLDQAVGASCEGLIIKTLNEEATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFVLACYDNNNEEFQSICKIGTGFTEAELIECSTSLGSQVISKPKSYYRFGETMNPDVWFEASKVWEVKAADLTISPVYRAAAGIVDPNKGISLRFPRLIRVRHDKAPEQATSSEQIAELYKAQKHNQANKQDAEDEEDY 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01853 791 Pfam ATP dependent DNA ligase C terminal region 646 757 IPR012309 GO:0003910|GO:0006281|GO:0006310
Viun11g01853 791 Gene3D - 152 419 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun11g01853 791 Gene3D - 626 789 IPR012340 -
Viun11g01853 791 MobiDBLite consensus disorder prediction 119 158 - -
Viun11g01853 791 MobiDBLite consensus disorder prediction 55 85 - -
Viun11g01853 791 CDD Adenylation_DNA_ligase_I_Euk 406 624 - -
Viun11g01853 791 FunFam DNA ligase 152 419 - -
Viun11g01853 791 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 409 627 - -
Viun11g01853 791 FunFam DNA ligase 626 785 - -
Viun11g01853 791 MobiDBLite consensus disorder prediction 53 93 - -
Viun11g01853 791 ProSiteProfiles ATP-dependent DNA ligase family profile. 523 659 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun11g01853 791 Gene3D DNA ligase/mRNA capping enzyme 446 571 - -
Viun11g01853 791 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 441 449 IPR016059 GO:0003909
Viun11g01853 791 CDD OBF_DNA_ligase_I 629 774 - -
Viun11g01853 791 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 63 789 - -
Viun11g01853 791 Pfam DNA ligase N terminus 175 350 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun11g01853 791 ProSitePatterns ATP-dependent DNA ligase signature 2. 595 621 IPR016059 GO:0003909
Viun11g01853 791 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 157 408 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun11g01853 791 NCBIfam ATP-dependent DNA ligase 233 773 IPR000977 GO:0003910|GO:0005524|GO:0071897
Viun11g01853 791 Pfam ATP dependent DNA ligase domain 417 621 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun11g01853 791 MobiDBLite consensus disorder prediction 772 791 - -
Viun11g01853 791 SUPERFAMILY Nucleic acid-binding proteins 629 775 IPR012340 -
Viun11g01853 791 FunFam DNA ligase 417 623 - -
Viun11g01853 791 Gene3D - 427 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01853 Viun-Chr11 34463449 34471455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01853 1 789 Core DNA Replication Machinery Family AT1G08130 63.230 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01853 K10747 - gmx:100783155 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01853 11 34463449 34471455 Viun11g01853 11 34463449 34471455 ECH