Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01848 ATGGAAACCACCGCAAAGGTTGTATCATCTAATTGTGTTCTTCTATCAGAGTTTTCTGAGTCTAACCCCACACAACTTTCTGCTATGGAACTTGGGATTCAGAATTTTGGGTGCACGCATTACAGAAGAAGATGCAAGATCAGAGCGCCGTGCTGTGATGAGGTTTTTGACTGCAGGCATTGCCATAACGAAGCTAAGAACTCTGAAGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATTTGCTGTTTATGTGACACAGAGCAAGATGTTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATATGCAAATTCTTTGATGATGATACTTCAAAGAACCAATACCACTGTGAAGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCCAAGATAATGGAAAATGGTCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCACACCATACATTTAGACTGTGTCAAAGAGATGGAAAAACATCATAGGTACTCATGTCCTGTGTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGGTGTGGATTCTTTGCAATGATTGTGGAGTGAAATCTCATGTACAATACCATATTGTGGCACATAAGTGTTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCACCTGCTACACCAAGCTCGTCTAGAGTGACAGAAATGGTGAAATGA 855 0.4129 METTAKVVSSNCVLLSEFSESNPTQLSAMELGIQNFGCTHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDVVDRHDVPRHEIKKVICCLCDTEQDVQQYCINCGVCMGKYFCDICKFFDDDTSKNQYHCEECGICRTGGKDNFFHCKRCGCCYSKIMENGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHHRYSCPVCSKSICDMSSLWKKLDKVVWILCNDCGVKSHVQYHIVAHKCLSCNSYNTRQIQGAPATPSSSRVTEMVK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01848 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 234 IPR013083 -
Viun11g01848 284 Pfam Zinc-ribbon 231 265 IPR039512 -
Viun11g01848 284 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Viun11g01848 284 Pfam Ring finger domain 173 216 IPR001841 -
Viun11g01848 284 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Viun11g01848 284 Gene3D - 235 272 - -
Viun11g01848 284 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Viun11g01848 284 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 268 - -
Viun11g01848 284 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Viun11g01848 284 SMART ring_2 174 216 IPR001841 -
Viun11g01848 284 FunFam RING finger and CHY zinc finger domain-containing protein 1 231 275 - -
Viun11g01848 284 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Viun11g01848 284 SUPERFAMILY RING/U-box 172 223 - -
Viun11g01848 284 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01848 Viun-Chr11 34445170 34447863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01848 34 274 C2H2 Transcription Factor Family AT3G18290 38.697 5.59e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01848 K10144 - gmx:100812709 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01848 11 34445170 34447863 Viun11g01848 11 34445170 34447863 ECH