Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01842 ATGGACAAAACCTATCTTCATCAAGAGACTCTACTGCACATCGATGACTTTGAGCTACAAGACTTTGTTGAAGATCCCAACTTAGATCAGTTGATAAATTTCATTCGTTTGGAGAAGAAAGATGCTATTTGCGACTTCAATTCTGAGCTTATCAATGAAGCATTCAATGATAACTCTTTGTTGCCACACCCTGCAACCCCATATGATCAGTGCAATATTAATGCTGTGAATGTCTATGATTCAAACTCCTTCTCTTGTTTTGATGGGGAAGCCAAAAGAGAAGCAGAAAAAGAGGAAGATGACATGGAACACTCATCTGCAACAACAAGCACCACCACAACAACAACAACAACAACACCTACTAAGAGTCTTGTTGCTAAGTCAAAACCAAAATCTGACAGGTCCAAAACACTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTCTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGCGATGCTGTGTCATATATGCATGAGCTTCAAGCACAAGCCAACATGCTTAAGTCTGAGGTTGAAGCTCTTGAAACATCCTTACTGGTGTCTGAAAACTACCAAGGATCAATTGAAAATCCCGTGAAGGATGATTTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGTGTGGCTGCCTCATTGTACGAAGCTCTAGAGTCTCTCTCAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTAACATTTTCATTGAATGTGAAAAGCTCTGGACCAGAAATTAACCTGCACAACTTGAAGATTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCACTTTTAATGCTTGACTCTTTCAATCTATAA 984 0.3892 MDKTYLHQETLLHIDDFELQDFVEDPNLDQLINFIRLEKKDAICDFNSELINEAFNDNSLLPHPATPYDQCNINAVNVYDSNSFSCFDGEAKREAEKEEDDMEHSSATTSTTTTTTTTTPTKSLVAKSKPKSDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKSEVEALETSLLVSENYQGSIENPVKDDFTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGVAASLYEALESLSGFHVQNSNLSTVGNSFQLTFSLNVKSSGPEINLHNLKIWVSEAFVKQGFEFIPLLMLDSFNL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01842 327 Coils Coil 178 198 - -
Viun11g01842 327 MobiDBLite consensus disorder prediction 91 143 - -
Viun11g01842 327 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 128 198 - -
Viun11g01842 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Viun11g01842 327 MobiDBLite consensus disorder prediction 91 105 - -
Viun11g01842 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 288 - -
Viun11g01842 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 197 IPR036638 GO:0046983
Viun11g01842 327 MobiDBLite consensus disorder prediction 106 126 - -
Viun11g01842 327 Gene3D - 125 198 IPR036638 GO:0046983
Viun11g01842 327 SMART finulus 138 187 IPR011598 GO:0046983
Viun11g01842 327 MobiDBLite consensus disorder prediction 127 143 - -
Viun11g01842 327 Pfam Helix-loop-helix DNA-binding domain 139 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01842 Viun-Chr11 34431660 34433501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01842 11 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 46.519 6.33e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g01842 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01842 K26214 - gmx:100778649 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03334 5 43693865 43695596 Viun11g01842 11 34431660 34433501 PCT