Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01837 ATGGAGATGGAAGGTTTAGATTCTAATTCTAATTCCAATTCCAATTCTAGCTCTACCCAGAGCAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGTTACCGCCGCCACCGCCGCCGCCACTGGAACCACCACCACCAGTTGCTCCAGTCCTAATTCCGGTGGCTCCTCCACCACCACTTGTGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCCTCATCAACCTCATCAACCTCATCAATCTCATCAACCTCGTCAACCTCATCATCACAAGCAACAAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAACGGTAACACCATCACCACCACCGCAACAACCGCCGTTGACACCAAAGTTGGCTTTTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCACTCGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTTTCGCCCGAAGAGAAAAAACCACCACCCTCTCAGTCGCCGCACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATACCGTTAACGTTAAAAGTGGTCCTCCGATTTCCCTTCAATTGGGTCATGGCAACAACAAGGGCAAGATTCATGAATGTTCCATCTGTGGTTCGGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCATCAACGAACACCAACACTGTCGACACTTCCAGTTCTAACACCGTCACCGCCGTGGCCACCACCGTTTCGCCGCCGCGGAGCGTCTTGCAATTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 954 0.501 MEMEGLDSNSNSNSNSSSTQSNIAKGKRTKRMRLLSPSGVVVVTAATAAATGTTTTSCSSPNSGGSSTTTCESEEEDMANCLILLAQGGESHPHQPHQPHQSHQPRQPHHHKQQVEDHNGVKTAKGNGNTITTTATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDTVNVKSGPPISLQLGHGNNKGKIHECSICGSEFSSGQALGGHMRRHRASSTNTNTVDTSSSNTVTAVATTVSPPRSVLQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01837 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Viun11g01837 317 SUPERFAMILY beta-beta-alpha zinc fingers 148 247 IPR036236 -
Viun11g01837 317 PANTHER ZINC FINGER PROTEIN ZAT5 63 299 - -
Viun11g01837 317 SMART c2h2final6 148 170 IPR013087 -
Viun11g01837 317 SMART c2h2final6 225 247 IPR013087 -
Viun11g01837 317 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Viun11g01837 317 Gene3D Classic Zinc Finger 145 247 - -
Viun11g01837 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Viun11g01837 317 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Viun11g01837 317 MobiDBLite consensus disorder prediction 50 73 - -
Viun11g01837 317 MobiDBLite consensus disorder prediction 89 131 - -
Viun11g01837 317 MobiDBLite consensus disorder prediction 161 190 - -
Viun11g01837 317 Pfam C2H2-type zinc finger 148 173 - -
Viun11g01837 317 Pfam C2H2-type zinc finger 225 249 - -
Viun11g01837 317 MobiDBLite consensus disorder prediction 1 25 - -
Viun11g01837 317 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01837 Viun-Chr11 34400466 34401724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01837 18 317 C2H2 Transcription Factor Family AT2G28200 39.875 1.25e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01837 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01837 - - var:108346781 341.273