Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01834 ATGATGCCAAAGGCTACATCTTCATCCACAAACGATTTTCAAGCACCTCAAATGTTTCCCGTGAATGAATATTTGGCTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTCTTCTCAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTCGATGTTCTTGTCTCCCCTCAACATAACCTACCCCACTCAACTATGGCAATCTCCACCATGAACGCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGGGTCTTGGTTCCTCTTCAGGAACCAGTAATATTGCTAATGAATTGCACCGAAACCAGAATCAGCAACAACTTGATCATGATAGAGTATTATCATCATCACCTCATCATCCATCGAACTTTGGTAATAGGGGTATGGTTAGTATGAGTAGCATCAGCATGAGCTCTGATATGATTAGAGGGCAGAGTGATTTCTTGTCTGGGATAGAAGGAGGGGCACTGGATTGGTTTGCTGAAAGCTACAACAACAACAGCAACAACATCGGAGATTGTAATAACGTTAAGGATGAAGAAGGCGACATGAACATGATGGGAGAGAGTGACATAATCGAATTGGATGCTGCTGATTTGTTGGCCAAGTATTCGTATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAGTGCAGCGTTGAGCAATCCAATGAAAAGCAAGGATAGTTTATTATTGGGTGAGGGAGGTTCCAGCAAGAAATATTCTTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCCAAGTTCCAGCCCTTGAAGTCAATGATCTGTGCTAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCGGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGTTCCTGTGGCACAACATTTTCTAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTCGTGGGACACACACCAGCTGTTCATGGTTTCTCAAGATATGTTCGATGA 1143 0.4471 MMPKATSSSTNDFQAPQMFPVNEYLASSSVELSSSSTSHSSTSLLCYLSLLKDKLGQLQNLVDVLVSPQHNLPHSTMAISTMNATLQEIIVAATSMRFTCQQMGLGSSSGTSNIANELHRNQNQQQLDHDRVLSSSPHHPSNFGNRGMVSMSSISMSSDMIRGQSDFLSGIEGGALDWFAESYNNNSNNIGDCNNVKDEEGDMNMMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPMKSKDSLLLGEGGSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAVHGFSRYVR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01834 380 MobiDBLite consensus disorder prediction 126 145 - -
Viun11g01834 380 Gene3D Classic Zinc Finger 314 364 - -
Viun11g01834 380 SMART c2h2final6 225 247 IPR013087 -
Viun11g01834 380 SMART c2h2final6 316 338 IPR013087 -
Viun11g01834 380 SMART c2h2final6 278 311 IPR013087 -
Viun11g01834 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Viun11g01834 380 Pfam Zinc finger, C2H2 type 225 247 IPR013087 -
Viun11g01834 380 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Viun11g01834 380 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 372 IPR044300 GO:0010044|GO:0010447
Viun11g01834 380 Gene3D Classic Zinc Finger 221 249 - -
Viun11g01834 380 FunFam Zinc finger protein 574 224 248 - -
Viun11g01834 380 SUPERFAMILY beta-beta-alpha zinc fingers 223 250 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01834 Viun-Chr11 34384765 34386584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01834 41 377 C2H2 Transcription Factor Family AT5G22890 50.427 1.22e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01834 zf-C2H2 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01834 - - vum:124833786 625.165