Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01828 ATGGCGAACAATACAAATTCAGCAGAACACTTTGTAGAGTTGTATGAAATTCGCACAGGTTTGAAAAGGGAATTTGCCTTTGCTATGAAGGCACAATCTCAGATATGTGGTTCTCTAGGTCGGACTAGATCGAAAAAGGCCCAAACTTTGGTTGAGTTGTCTAATGATTCATCCCACAAGCTATGCGAAAAATCTAGGCAACAAAAGATTCAAAATTTAACAAATTTAGCAAAAACTAAGGAGGATACTAGTGTTGCTCTAAGTGAAAAGGAAGTAAATAGTGATGTGATGGATGTAGAAAAACTTAAAAGTCAAATGAGTGATGAAACAAGGATGTTGGTTATTTGTGAAAAGGAGCACAAGAGTGATGAACCTAAAACCCAACTGGAGGATAAAGGTGTAATGATTGTTGTTTGTGATGAAGAGCATAATAATGATGAACCTAAGACTGAGATTGGACAAAATCAACCTGCTTGTGATAATGACATAATCAAAGAGGAAGATGTCAATGATGAGATTGTTTCAACTTTGGATTACAAGTTGAAAAACCCAATAGAGTCTATACAATCAACATTACAAAAATTAGAAAATGGTGATAGCAAGGTTGAGAGTAATGGTATTGAGAAAGAAAGGAAAAATGTTTCTATGATTGTTGCTTCAACTCCGGTGACATCTTCTATGAGGTTTATGGGAAAAAAATTTCCTTCCAAGCTAAAAGACTTTTTATCTTCTGGAATTCTTGAAGGACTACTTGTGAAATATATTCGCAGCATCAAGGCGAAATCTATAGGACTTCTGGGAGTCATTTCTGGCGTTGGAATATTGTGTTATTGTGAAGTTTGTAACAAAGCTGAAGTTGTGTCACCCACAATTTTTGAGTTGCATGCTGGTAGCTCAAACAAACGTCCTCCAGAGTATATTTTCCTTGAGAATGGATGTACTCTTCGTGATATCATGAATACATTTTTGAATCATCCATTAAACACTTTGGAGGAAGTTGTGCAGAATGCTTTGGGAGGCTTCACAATGAGAAGATCTAAGTTTTGTGTAAATTGCAGAGATGTCAATGTCGTATCGAAATTATTCTGTAATTCATGCGTGGAGTTACTAAAGGATTGTGAAGCTAGTCTCACTTCAACAAATGACACCAATGATACCTTTGCATTTCAATCCAGGTCTTCGGAGTTAGCTATGTTTCCAAAGTCATTAAATTGTGGAATGAAACATAGCACATCTCGTGGAAAGAGCAAAGGACAACTAATTAGGAAGGATTTACGCATGCATAAACTAGTATTTGAGAAAGATGGGTTGCCAGATGGAACTCAAGTTGGATACTATATTCATGGAAAGAACCTATTATCTGGATATAAGAAGGGATCTGGAATTGTATGTAATTGTTGCAATCGTGAGATTAGTCCTTCGCAATTTGAAGCACATGCAGGTTGGGCATCGCGACGAAAGCCTTATGTGCACATATTTGTATCTAATGGACTATCACTCCATGATTTGTCTATCTCCCTATCACAAGGTCGGAAATTTTCTACCAATGATAATGATGACCTATGTAGTATATGCAGAGATGGAGGAAATCTTTTGTGTTGCGATGGATGCCCAAGAGCTTTTCACCCAGAATGTGTATCTCTTCCATGTATTCCAAGTGGTACATGGTATTGTAGGTATTGTCAAAATTTGTTTCAAGACAACAAATGTATTGAGCATAACGAGAATACCAAGGTTGCAGGGAGAGTTGAAGACATTGATCCCTTAGAACAGATGAACCAGAGATGCATTCGTGTTGTCAAAGAATTTGAACTTGGTGGATGTGCATTGTGTAGAGGCCAAGATTTCAGCAAAAGCTTTGGACCTCGAACAGTGATTATCTGTGATCAGTGCGAAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATGCAGAACATAGAGGAATTACCTGAAGGGAATTGGTTTTGCTGTTCAGAATGTGAGAACATTAATACTACCTTAGTGAATTTGGTGGCTCGTGGAGAAGAGAATCTTCCAAATCCTCTCTTGAGTTTGATAAAAAAGAAATACAATAACAAAGGCTTAGAATTTGGGTCTGATATTCGTATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTGAATCTGAAGAGACAAGACAATTGCTTTCAAAAGTTGTTGCTATTTTTCATGAGCAATTTGATCCAATAGTTCATACTACAACCGGCATTGATTACATTCCAGCAATGATTTTTGGAAGGAACATTATAGGTGAAGATTTTAGTGGAATGTACTGCATGTTACTCACTGTGAACGAAGTGGTTGTGTCTGCTGGAATTTTTCGTGTGTTTGGGTCAGAAATTGCAGAACTTCCCTTAGTGGCTACTGTTACTGATTTTCAGGGACAGGGTTACTTTCAATCTCTGTTTTCTTGCATTGAGGGTTTGCTTGGATCATTGAAAGTGAAACGATTTGTTCTACCTGCTGCTAGTGAAGCTGAATCAATATGGATCAATAAATTTGGATTTACAAAGCTAGATCAAGATAAGATCAACAACTATTGGAAATATTATCACATGATGATCTTTCAGGGGACCTCTTTATTACATAAGCAAATTCCTCAATTTTGA 2634 0.3698 MANNTNSAEHFVELYEIRTGLKREFAFAMKAQSQICGSLGRTRSKKAQTLVELSNDSSHKLCEKSRQQKIQNLTNLAKTKEDTSVALSEKEVNSDVMDVEKLKSQMSDETRMLVICEKEHKSDEPKTQLEDKGVMIVVCDEEHNNDEPKTEIGQNQPACDNDIIKEEDVNDEIVSTLDYKLKNPIESIQSTLQKLENGDSKVESNGIEKERKNVSMIVASTPVTSSMRFMGKKFPSKLKDFLSSGILEGLLVKYIRSIKAKSIGLLGVISGVGILCYCEVCNKAEVVSPTIFELHAGSSNKRPPEYIFLENGCTLRDIMNTFLNHPLNTLEEVVQNALGGFTMRRSKFCVNCRDVNVVSKLFCNSCVELLKDCEASLTSTNDTNDTFAFQSRSSELAMFPKSLNCGMKHSTSRGKSKGQLIRKDLRMHKLVFEKDGLPDGTQVGYYIHGKNLLSGYKKGSGIVCNCCNREISPSQFEAHAGWASRRKPYVHIFVSNGLSLHDLSISLSQGRKFSTNDNDDLCSICRDGGNLLCCDGCPRAFHPECVSLPCIPSGTWYCRYCQNLFQDNKCIEHNENTKVAGRVEDIDPLEQMNQRCIRVVKEFELGGCALCRGQDFSKSFGPRTVIICDQCEKEYHIGCLKDHNMQNIEELPEGNWFCCSECENINTTLVNLVARGEENLPNPLLSLIKKKYNNKGLEFGSDIRIKWRLLNWKVGESEETRQLLSKVVAIFHEQFDPIVHTTTGIDYIPAMIFGRNIIGEDFSGMYCMLLTVNEVVVSAGIFRVFGSEIAELPLVATVTDFQGQGYFQSLFSCIEGLLGSLKVKRFVLPAASEAESIWINKFGFTKLDQDKINNYWKYYHMMIFQGTSLLHKQIPQF 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01828 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 602 IPR013083 -
Viun11g01828 877 PANTHER AUTOIMMUNE REGULATOR 51 873 - -
Viun11g01828 877 ProSitePatterns Zinc finger PHD-type signature. 522 561 IPR019786 -
Viun11g01828 877 Pfam PHD-finger 522 563 IPR019787 -
Viun11g01828 877 SUPERFAMILY FYVE/PHD zinc finger 607 660 IPR011011 -
Viun11g01828 877 Gene3D - 704 874 - -
Viun11g01828 877 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 745 854 IPR016181 -
Viun11g01828 877 SMART PHD_3 521 562 IPR001965 -
Viun11g01828 877 SMART PHD_3 607 663 IPR001965 -
Viun11g01828 877 ProSiteProfiles Zinc finger PHD-type profile. 519 564 IPR019787 -
Viun11g01828 877 CDD PHD1_AIRE 521 561 - -
Viun11g01828 877 SUPERFAMILY FYVE/PHD zinc finger 511 563 IPR011011 -
Viun11g01828 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 665 IPR013083 -
Viun11g01828 877 Pfam Tify domain binding domain 267 320 IPR032308 -
Viun11g01828 877 Pfam Tify domain binding domain 455 503 IPR032308 -
Viun11g01828 877 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 508 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01828 Viun-Chr11 34346689 34352633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01828 419 874 PHD Transcription Factor Family AT2G36720 55.435 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun11g01828 TDBD 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01828 - - aprc:113859749 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03319 5 43625042 43632226 Viun11g01828 11 34346689 34352633 PCT