LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01827	ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGAGCAAAGGAGGAGTGGGTTGATTGCTGAGCTCTCACAGGAAGATAGACTGGATATACAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAATGGATCCCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAGTTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAATAGGGAAGAATCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCATTGTTAACCAGAATGGAGGCCAAAACGAGCATACACGTAGGGGCATACGAAAATTATGTGGCCGGCAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGACTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAGGCCCCTGTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGTTTTTTCGCTAGAAAGGAGAATAGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACATTTGGTCCCAATTGTACATTCTGAACAGTCTGACCCTAATCACAGAGGAAGCGATGGTCTCGGGGTATCAGACAGCCAGAGCTGTGTACAAGGTACCACATCTGAGAATCTAAATTGGCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTGCCTATTGGATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGATAGTGTGAACAGCAACGAGCAAAATGTTGATGTGTTGCCTATTGATTACGATGCTAATGAAATTACCCAACAAAGCTTGCCAATTGAATATTCGATGTATAATAATAACCAGGAATCCAGCGAGGTGCATATTGAGCATTCTGAGCTGTGTGATATAAATAGTATTGAAAACAATTCTTCAAATCATGGCATTCATATGGATGGTAATGTTGACGATGTAAATTGGAATGAATCCAGTGCTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAATATTGAATGGAGAAATAGCACTGAGGAAAGTGCAGGGGGTAATCAGCTCAGTAACCCAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGGGGATGGAGAAAACTCCCATCTACAAGAATCTCATGAAGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAGTGCTCCAGCTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGATAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCACACATTGACTGGGAATCGCAAGAAACAAGCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGATGGTCCGGTTAACAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGACATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCGTCTGAAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAAGAAAAAATGCCCTATGTGTCAAGCTCCTGTGGTAGAGGTGATAAGGGCTTACTCTATACAATAA	2586	0.4323	MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLEQRRSGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSQSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNGSRRSSGSRREWLGETEQERVRVIREWVQMSSQQRSVSSGENREESSAEIGTQIERVRDGLIVNQNGGQNEHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFFARKENSGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSHLVPIVHSEQSDPNHRGSDGLGVSDSQSCVQGTTSENLNWQESNAQVGDRMQHLPIGSLDCQSSFSASVDSVNSNEQNVDVLPIDYDANEITQQSLPIEYSMYNNNQESSEVHIEHSELCDINSIENNSSNHGIHMDGNVDDVNWNESSALEVEQPEEAFENEGSDWYQNNIEWRNSTEESAGGNQLSNPGNEWPENTLGNGDGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHESAPAGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNAHIDWESQETSPSSDSVEQDLEQQSRDQIVDQDGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSEIHDCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSKKKCPMCQAPVVEVIRAYSIQ	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	102	136	-	-
	Viun11g01827	861	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	793	859	IPR013083	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	192	207	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	370	395	-	-
	Viun11g01827	861	Coils	Coil	243	263	-	-
	Viun11g01827	861	CDD	mRING-HC-C3HC5_NEU1	809	858	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	192	211	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	660	675	-	-
	Viun11g01827	861	ProSiteProfiles	Zinc finger RING-type profile.	809	848	IPR001841	-
	Viun11g01827	861	SUPERFAMILY	RING/U-box	808	854	-	-
	Viun11g01827	861	Coils	Coil	737	764	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	540	568	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	17	39	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	660	710	-	-
	Viun11g01827	861	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	437	861	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	540	580	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	377	395	-	-
	Viun11g01827	861	MobiDBLite	consensus disorder prediction	112	126	-	-
	Viun11g01827	861	Pfam	Zinc finger, C3HC4 type (RING finger)	806	853	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01827	Viun-Chr11	34326454	34331677	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01827	809	855	C3H Transcription Factor Family	AT3G06140	40.426	1.99e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01827	-		-	gmx:100801329	1387.09