Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun11g01826 | ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGAGCAAAGGAGGAGTGGGTTGATTGCTGAGCTCTCACAGGAAGATAGACTGGATATACAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACAAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAATGGATCCCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAGTTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAATAGGGAAGAATCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCATTGTTAACCAGAATGGAGGCCAAAACGAGCATACACGTAGGGGCATACGAAAATTATGTGGCCGGCAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGACTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAGGCCCCTGTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGTTTTTTCGCTAGAAAGGAGAATAGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACATTTGGTCCCAATTGTACATTCTGAACAGTCTGACCCTAATCACAGAGGAAGCGATGGTCTCGGGGTATCAGACAGCCAGAGCTGTGTACAAGGTACCACATCTGAGAATCTAAATTGGCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTGCCTATTGGATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGATAGTGTGAACAGCAACGAGCAAAATGTTGATGTGTTGCCTATTGATTACGATGCTAATGAAATTACCCAACAAAGCTTGCCAATTGAATATTCGATGTATAATAATAACCAGGAATCCAGCGAGGTGCATATTGAGCATTCTGAGCTGTGTGATATAAATAGTATTGAAAACAATTCTTCAAATCATGGCATTCATATGGATGGTAATGTTGACGATGTAAATTGGAATGAATCCAGTGCTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAATATTGAATGGAGAAATAGCACTGAGGAAAGTGCAGGGGGTAATCAGCTCAGTAACCCAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGGGGATGGAGAAAACTCCCATCTACAAGAATCTCATGAAGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAGTGCTCCAGCTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGATAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCACACATTGACTGGGAATCGCAAGAAACAAGCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGATGGTCCGGTTAACAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGACATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGAAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAAGAAAAAATGCCCTATGTGTCAAGCTCCTGTGGTAGAGGTGATAAGGGCTTACTCTATACAATAA | 2577 | 0.4319 | MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLEQRRSGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSQSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNGSRRSSGSRREWLGETEQERVRVIREWVQMSSQQRSVSSGENREESSAEIGTQIERVRDGLIVNQNGGQNEHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFFARKENSGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSHLVPIVHSEQSDPNHRGSDGLGVSDSQSCVQGTTSENLNWQESNAQVGDRMQHLPIGSLDCQSSFSASVDSVNSNEQNVDVLPIDYDANEITQQSLPIEYSMYNNNQESSEVHIEHSELCDINSIENNSSNHGIHMDGNVDDVNWNESSALEVEQPEEAFENEGSDWYQNNIEWRNSTEESAGGNQLSNPGNEWPENTLGNGDGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHESAPAGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNAHIDWESQETSPSSDSVEQDLEQQSRDQIVDQDGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAEIHDCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSKKKCPMCQAPVVEVIRAYSIQ | 858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 102 | 136 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
| Viun11g01826 | 858 | SUPERFAMILY | RING/U-box | 805 | 851 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 370 | 395 | - | - | |
| Viun11g01826 | 858 | Coils | Coil | 243 | 263 | - | - | |
| Viun11g01826 | 858 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 437 | 858 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 192 | 211 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 660 | 675 | - | - | |
| Viun11g01826 | 858 | CDD | mRING-HC-C3HC5_NEU1 | 806 | 855 | - | - | |
| Viun11g01826 | 858 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 790 | 856 | IPR013083 | - | |
| Viun11g01826 | 858 | ProSiteProfiles | Zinc finger RING-type profile. | 806 | 845 | IPR001841 | - | |
| Viun11g01826 | 858 | Coils | Coil | 737 | 764 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 540 | 568 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 660 | 710 | - | - | |
| Viun11g01826 | 858 | Pfam | Zinc finger, C3HC4 type (RING finger) | 803 | 850 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 540 | 580 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 377 | 395 | - | - | |
| Viun11g01826 | 858 | MobiDBLite | consensus disorder prediction | 112 | 126 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun11g01826 | Viun-Chr11 | 34326454 | 34331677 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun11g01826 | 806 | 852 | C3H Transcription Factor Family | AT3G06140 | 40.426 | 1.99e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun11g01826 | - | - | gmx:100801329 | 1376.3 |