Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01825 ATGGAATTCTCTTACCGCAGATTGCTGATGCAGAACGAGGACGTTCCAATCTCCACGTCCATGCCTCCTCTTCCTCACGCCAAACACGCCACAAACGCTTCCTCGCCGCAAGTGTCCATAGGAAGTCCTCTGGAAGTGTCCATTCGTCCGGTGTTCACTTCGAGCGTTGCCTACGTGTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGATTCGTGTTTCTCTACTTCCAACAGCACCACTCGTCGTCGGAGCCCGAGTCCGGCGCCATCCGGCGGCGATCACAGTCGGAGTCCGTGGTGGCGGAGAAGTCTCTGGCGGTGGTGGCGGATGCGGCGAGGCAGGGGGATTGCGCGATATGTCTGGAGGAGGTCGGAGAGGGAGAGGCGGTGAAGATGATTGCGTACTGCAAGCACGTGTTCCACGCGGATTGCATTGACCGGTGGCTGGAGAAGCACGTGACGTGCCCCGTGTGCCGGTGCTGCTGCGAGAAGTGTGGAGAGGTGGAGTCGGTGACGGTTAGAGGAGACGAAGGAGAAGATGCAGAAGCGTTTCCGTAA 561 0.5829 MEFSYRRLLMQNEDVPISTSMPPLPHAKHATNASSPQVSIGSPLEVSIRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQHHSSSEPESGAIRRRSQSESVVAEKSLAVVADAARQGDCAICLEEVGEGEAVKMIAYCKHVFHADCIDRWLEKHVTCPVCRCCCEKCGEVESVTVRGDEGEDAEAFP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01825 186 PANTHER RING FINGER DOMAIN-CONTAINING 22 163 - -
Viun11g01825 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 160 IPR013083 -
Viun11g01825 186 SUPERFAMILY RING/U-box 117 164 - -
Viun11g01825 186 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Viun11g01825 186 CDD RING-H2_PA-TM-RING 117 160 - -
Viun11g01825 186 SMART ring_2 118 159 IPR001841 -
Viun11g01825 186 Pfam Ring finger domain 117 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01825 Viun-Chr11 34319225 34320022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01825 52 178 Rapid Response to Elicitors AT3G05200 36.735 8.87e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01825 - - var:108339852 330.102