Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01822 ATGTCTCTCTCTGAACTTCAAAAGCAAACTCAAAATGTAAGCCAAGTTACTCCAGAAAAGGAGAACTGGAATATCATTGTTAGGGTGATACGTTCATGGTTCGTTCCAGATTTCACTAAACAGAGGTGTCCTTTTTCCATGGAGTTGGTTATTCAAGACAAAGAGGGTTCTAAAATACATGCTTCCATCAGACGTACTCTAATTTACAAATTCCAGACTGAAATTTCTGAAGGTGGTGTTTATGCCATACAAAATTTCAGTGTTGCTCCAAATTCTGGAATTTACAGAACTACGCACCACCCTTATAAGATTAATTTCCAGTTTGGTACCAAAGTTAGTTTGCTTGATGGTAACTTGGTTCCTGATGTGAAACCACAATACACACCTTTGTCATTATTGACAACCACTGGATTCGATACTGATTATTTAGTTGATGTATTTGGATTACTGGTCGGAGTGGGTACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATTGCAATAGAAGCTGATGGGTTTCGAATAGAATGTACTTTGTTTGGTATTTATGTCGATGAACTGAATGTATTTCTTTCAAGTGGAGAAGTACAAAATTGTGCTATAAGTATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAACTTCAAAATTGCAAGTTCTGCACTAGGATTAAGTACAACGTTAACTTCAAGGAGGCATCTGAACTTAAATCAAGGATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAGCTGTCTCAGACTTCCAAAAATACTGTGGAAGAAGACTTTTTAACTGTTACACCTAGGACGACTATTCAAGGTCTTAAAGATTGTAAAGAGGTTGCAACTTTCATATTGTTTGGAACCATTAACCATATCTTGGATGAGGATGACTGGTGGTATACGGCTTGTGTTTGCAACAAAGCTGTTTATCCAGATTCAAAGATGTTCTTTTGCGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGGTTCGAGTTATTGACTCATCCGATTCCACCACATTTGTTCTGTTTGATAGGGATGCAACCACCCTTTTCAAAAAAACCTGTGCTGATATGTTAGAATCTCATGATAAGATGAATGGTTGTGGGAATTTTCCTAAGGAGTTTGAAGAATTAGTTAATCAAAGTCTGCTGTTTAAAGTTGAAAGTAGGAACGATCAAACTTTCAAACTTGAACAATCTTTCAGAGTGAAGAAAATATGTCTTGATGATGATATAATTGAGAAGTTCAATGATTCTTCGTTGAAATCTGTGGATGTTTATGCTGGCAATGGTGAGTTTAGCAGAGAAAAACAGCGTGTAGTCAATGAGTCTACTGTTGATATTGTCGAGGATTTATTAGTCAGATTTACCAAAGAAACAATTGACTGTGCATCCCAATCTGCTGACTTAATCAAAGATACTGCTACGAATGAGGATGGTAACACTTCACTTAAGAGAGAATCTGCAAAGAAGACCTTATCACTTGAATCCATCGAAGAAGACACTTCCTACCAAATGGAGAACAACTTCAACCAAGAACAAGTTGTTAATACAATGAGTAGGTACCAGTTCTGTATTATCCACCTTGAGGATGAGGTTGTTGGGTTTGTGGATCGTGCGTTCGCCATTCTTTATGATCACGATCTTCAACGTCAATGGACTTTAACAGATGAAGAAGGCAATAGACATGTCGTCACTTATAACAAGAATTTACAGAAACCAATGGATTTGCCTTCTGATTTTGGCAATTATCTTCGTCAAGGAAGATTTAAATACATTCTTCTTCATGGACCTCGCGAAATAGTCAAGTGCAAACTACTCTTGAGAAATCATCCAAAGAAGTCTAACAAAATAGGAAGTGGGTGGAAGGAATTTTGTACTGCTCATGGATTTGATCAACCTATTGACTTGGTGTTTGAAGTTGATCAGATGAAAAGCAATCAGAATGTCAAAGTGCTTACATATTGTAATCTTTAA 2031 0.3644 MSLSELQKQTQNVSQVTPEKENWNIIVRVIRSWFVPDFTKQRCPFSMELVIQDKEGSKIHASIRRTLIYKFQTEISEGGVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLLDGNLVPDVKPQYTPLSLLTTTGFDTDYLVDVFGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNCAISIEFAKVKTFQDKVQLQNCKFCTRIKYNVNFKEASELKSRMIENNESPSQGLTQLSQTSKNTVEEDFLTVTPRTTIQGLKDCKEVATFILFGTINHILDEDDWWYTACVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKVRVIDSSDSTTFVLFDRDATTLFKKTCADMLESHDKMNGCGNFPKEFEELVNQSLLFKVESRNDQTFKLEQSFRVKKICLDDDIIEKFNDSSLKSVDVYAGNGEFSREKQRVVNESTVDIVEDLLVRFTKETIDCASQSADLIKDTATNEDGNTSLKRESAKKTLSLESIEEDTSYQMENNFNQEQVVNTMSRYQFCIIHLEDEVVGFVDRAFAILYDHDLQRQWTLTDEEGNRHVVTYNKNLQKPMDLPSDFGNYLRQGRFKYILLHGPREIVKCKLLLRNHPKKSNKIGSGWKEFCTAHGFDQPIDLVFEVDQMKSNQNVKVLTYCNL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01822 676 CDD RPA1_DBD_B_like 145 248 - -
Viun11g01822 676 SUPERFAMILY Nucleic acid-binding proteins 12 115 IPR012340 -
Viun11g01822 676 CDD RPA1_DBD_A_like 25 112 - -
Viun11g01822 676 Gene3D - 120 256 IPR012340 -
Viun11g01822 676 Gene3D - 260 433 IPR012340 -
Viun11g01822 676 CDD RPA1_DBD_C 294 424 IPR047192 -
Viun11g01822 676 SUPERFAMILY DNA-binding pseudobarrel domain 591 672 IPR015300 -
Viun11g01822 676 Pfam Domain of unknown function DUF223 48 116 IPR003871 -
Viun11g01822 676 SUPERFAMILY Nucleic acid-binding proteins 136 247 IPR012340 -
Viun11g01822 676 Gene3D - 8 113 IPR012340 -
Viun11g01822 676 Pfam Replication factor-A C terminal domain 297 418 IPR013955 -
Viun11g01822 676 SUPERFAMILY Nucleic acid-binding proteins 277 411 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01822 Viun-Chr11 34292161 34296722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01822 6 421 Core DNA Replication Machinery Family AT5G08020 23.702 4.22e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01822 - - vun:114184752 957.977