Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01815 ATGTCTGGCCGCGGCTCTAAGCAATCGGATTTCAACCGTCCGCCGCAATCCGCGGCTTCTTCTTCCGCTGCCGGAGGCCGAGGCCGAGGCCGTGGTCGCGGCCGCGGCGCACATTCCGCGCCGTCTCCTCCGACTCAAACATCGCACCCTCCTTCATACGCTGCTTCTCCGGCCCCGCCCACCGCCGCTCCTCCCCGAGCGGTGGCGCCTGTCCCTGCATCAACGGGGCCGGGTCCATCCCGCCCTCCGCCGGTTCAATCCTCGCCGGCGCCAGTTTCTGGATCGCCAGCGGTTGCTACAACAACGTCGCCGTCTCCGGCGGTTGAAGCAGTTACTTCGGCGCTCGAGAAGCAACTGTCATTGGCGCCGTCGGCACCGTCGTCGTCGAAGGCTGTGAGATTCCCGGACCGGCCAGGAATAGGAAGATCGGGAAAGAAGATCCAAGTGCGAGCCAATCATTTTCAAGTCCAAGTTGCGATGTTGGACATTTATCACTACGATGTAGCGATTTCTCCTGAGATTACTTCGAAAAAGATCTCCAGAGATATTATTAATTTGTTGGTTCGAGCACACCGTGAATCGATTCTGGGAAATCGCATGACCGCGTATGACGGACGGAAGAGTCTTTTCACCGCTGGACCTTTGCCTTTTGAAGTTAAGGAATTTAAGGTCAAGCTGGGAGATAACGATGAACCAGGGTCTTCTGCCACTCCTACTTCTGATAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATACGATTTGCTTCGAAGACCGACCTTCATCATCTGACTCAGTTTCTTGCTCGCCGGCAGTTGGACTGCCCACAGGAAACGATTCAGGCTCTTGATGTTGTACTCCGGGCTACACCTTCTGAGAAGTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCCGCATTGGGACCAAAAGGACCTTTGGGTAATGGGACTGAATATTGGCGGGGGTATTACCAGAGTCTCCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTGTCAGCCAGGGCGTTTTATGAGCCCATTCCTGTCCTTGACTTTATTTCTAAGAATTTTAGACTCGATCTTCGCAGGCCTTTGCATGATCAGGACCGAGTTAAGATTAAGAAAGCTTTGAGAGGAGTCAAGGTCCAAGTTAATCATGGACAGAATATTAGGCGTTACAAAGTTAGTGGACTTTCCAAAGAACCCCTCAGAGCCTTAATGTTTACTGATGACAATGGAACAAAAAAATCCGTTCCTCAGTATTTTCAAGAGAAATATAATATTTCATTACAGTATACCCAGCTTTCTGCTCTTCAAGCTGGTAGTGACACCAAGCCAATTTTTTTGCCAATGGAGCTTTGTCAAATTGTGGCTGGACAGAGATATACCAAAAAATTAAATGAGGATCAAGTATCCGCCCTTTTAAGCGCAACACGCCAGGGTCCTCGTGATAGGGAGGATTCCATCAGACAGATTGTGAGGCAGAGCAAGTTCAGTACGGACAAATTTGCCCAGCACTTTCAAATTAAAGTCAGGGAGGATCCGGCATTGCTTGAAGCTCGTGTTTTACCTCCCCCTATGCTTAAATACCATGGATCGGGTGGTGAATCACAGGTTCAGCCAAGGATGGGTCAATGGAATATGATTAATAAGAAAATGATTGCTGGTGGCACTGTTGAACACTGGACTTGCCTAAACCTATCTGGAAGAATACACAGGGATCTGCCATATCAACTTTGTCAGAATTTGGCTGAAATGTGTAACAGCAAGGGAATGCGGTTCAAAGAAAGTCCTGTAGTGCCTATAACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTTATGAACCTGCATAAGCAGTGCAAACAGGCGAACGTAGGGCTCCAACTCTTAATAATAATTTTACCTGACATCAAGGGTTCTTATGGGAAAATAAAGCGCATTTGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGTCAGCCCAAGCAAGTGGTCAAAATGAACAAGCAATATCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTGGGAGGAACGAACACGATATTGAATGATGCATTTGCTAATAGAATACCTCATGTATCCGATGTACCGACTATAATATTTGGTGCAGATGTTACGCATCCCCAGCCTGGAGAGGACAGTAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTCGTAACAAGGTACAAAGGAGTTGTGTCTGCTCAGAAACATCGGGAAGAAATTATACAAGATCTTTTTATTCAGGATCCGGCCGGGGGAAATGCACATTCAGGAATTATCAGGGAGTTGTTTCGAGCTTTCCGGCTTTCAACTCGTCGTAAACCGGAGAGAATTATATTCTACAGAGATGGGGTCAGCGAAGGACAGTTCAATCAAGTGCTTCTTTATGAGATGGATGCCATAAGACGGGCATGTAACTCTCTAGAAGCGGATTACTTACCCCCGGTTACTTTTGTGGTGGTCCAGAAGAGGCACCACACTCGTTTGTTCCCTATGGATCACGGAGGTCGTGATTCTACAGATAGAAGTGGAAATATAATGCCAGGGACTGTAGTTGACACAACCATATGTCATCCTCGGGAGTTTGACTTTTATCTGAATAGTCATGCTGGAATCCAAGGAACAAGCAGACCAACTCATTACCACGTATTGTTCGATGAGAATAAGTTTACTGCTGACGAGTTGCAAATTTTAACTAATAATTTGTGTTATACCTATGCAAGGTGTACACGATCAGTTTCAATAGTTCCTCCCGCATACTATGCCCATTTGGCAGCTTTCCGTGCTCGCTATTACATTGAAGGTGACACCTCTGATGCTGGTTCTTCAACTGGAGGCAAGAGTACTACAGCCAGCTTTGAGGTAAAATTGCCCTCCGTCAAGGGTAATGTCGCCGACGTCATGTTTTTCTGTTGA 2964 0.4706 MSGRGSKQSDFNRPPQSAASSSAAGGRGRGRGRGRGAHSAPSPPTQTSHPPSYAASPAPPTAAPPRAVAPVPASTGPGPSRPPPVQSSPAPVSGSPAVATTTSPSPAVEAVTSALEKQLSLAPSAPSSSKAVRFPDRPGIGRSGKKIQVRANHFQVQVAMLDIYHYDVAISPEITSKKISRDIINLLVRAHRESILGNRMTAYDGRKSLFTAGPLPFEVKEFKVKLGDNDEPGSSATPTSDRKKREREFRVTIRFASKTDLHHLTQFLARRQLDCPQETIQALDVVLRATPSEKFDVVGRSFFSPALGPKGPLGNGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEPIPVLDFISKNFRLDLRRPLHDQDRVKIKKALRGVKVQVNHGQNIRRYKVSGLSKEPLRALMFTDDNGTKKSVPQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVSALLSATRQGPRDREDSIRQIVRQSKFSTDKFAQHFQIKVREDPALLEARVLPPPMLKYHGSGGESQVQPRMGQWNMINKKMIAGGTVEHWTCLNLSGRIHRDLPYQLCQNLAEMCNSKGMRFKESPVVPITSSPSGQIENALMNLHKQCKQANVGLQLLIIILPDIKGSYGKIKRICETELGIVSQCCQPKQVVKMNKQYLENLALKINVKVGGTNTILNDAFANRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHREEIIQDLFIQDPAGGNAHSGIIRELFRAFRLSTRRKPERIIFYRDGVSEGQFNQVLLYEMDAIRRACNSLEADYLPPVTFVVVQKRHHTRLFPMDHGGRDSTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDAGSSTGGKSTTASFEVKLPSVKGNVADVMFFC 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01815 987 SUPERFAMILY PAZ domain 146 498 IPR036085 GO:0005515
Viun11g01815 987 Gene3D - 524 695 - -
Viun11g01815 987 FunFam protein argonaute 10-like 700 987 - -
Viun11g01815 987 Pfam Argonaute linker 2 domain 486 532 IPR032472 -
Viun11g01815 987 SMART PAZ_2_a_3 349 485 IPR003100 GO:0005515
Viun11g01815 987 MobiDBLite consensus disorder prediction 1 23 - -
Viun11g01815 987 MobiDBLite consensus disorder prediction 91 109 - -
Viun11g01815 987 MobiDBLite consensus disorder prediction 44 90 - -
Viun11g01815 987 Pfam Piwi domain 634 949 IPR003165 GO:0003676
Viun11g01815 987 SMART DUF1785_2 296 348 IPR014811 -
Viun11g01815 987 FunFam Argonaute 10 524 694 - -
Viun11g01815 987 MobiDBLite consensus disorder prediction 226 245 - -
Viun11g01815 987 ProSiteProfiles PAZ domain profile. 349 460 IPR003100 GO:0005515
Viun11g01815 987 SMART Piwi_a_2 632 950 IPR003165 GO:0003676
Viun11g01815 987 Pfam Mid domain of argonaute 543 621 IPR032473 -
Viun11g01815 987 CDD Piwi_ago-like 504 949 IPR045246 -
Viun11g01815 987 SUPERFAMILY Ribonuclease H-like 616 950 IPR012337 -
Viun11g01815 987 MobiDBLite consensus disorder prediction 1 139 - -
Viun11g01815 987 Pfam PAZ domain 353 475 IPR003100 GO:0005515
Viun11g01815 987 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 124 951 - -
Viun11g01815 987 Gene3D paz domain 343 464 - -
Viun11g01815 987 Pfam Argonaute linker 1 domain 298 347 IPR014811 -
Viun11g01815 987 Gene3D - 701 987 IPR036397 GO:0003676
Viun11g01815 987 ProSiteProfiles Piwi domain profile. 632 950 IPR003165 GO:0003676
Viun11g01815 987 Pfam N-terminal domain of argonaute 145 287 IPR032474 -
Viun11g01815 987 CDD PAZ_argonaute_like 348 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01815 Viun-Chr11 34188686 34194684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01815 98 987 Eukaryotic Initiation Factors Gene Family AT1G48410 57.900 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01815 K11593 - gmx:100799033 1360.9