Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01803 ATGGAGGCGCCCGTAGCGAGACCGAGGGGGCGTCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAATGAAGCAAAGAAGCTGGCGTCCATGGGGACGCGACCTGTGGCTTTGGTAGGAAGGTTCGTTTTGAAAAATTTTCCCAGGAATGGAGTGTTCCTAGGAAAAGTAGTGTACTACGAAAGTGGTCTTTATAGAGTTTGTTACGAGGATGGGGATTCAGAGGACCTTGACAGTGGTGAGGTTCGTTCTATACTAGTAAAAGAGGGTGAAATTAATGGTGATTTGGTGGGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATGGTGGAAAGATCGGAATTGGTTCTAAGAAGGGACCAGTTGAATCCACTAAGGAGGAATCTGGGGCTGGAGTTTGTGAATTGAAGGATGGTGGATTGATTGAAAAAGATGAGGAAGAAGGTGATGAGGAGGATGATGAGGATGTCAATTCTTCGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTGTTCTCTGTATATGGATTCCTGAGATCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACGAATTCTCTGTTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGGCAGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCATCAAGATGCCTAAGGTGCAATGAATGGAGCTTGTTGGATCCAGTGACATGGCCAGTCTTCCTTATACAATATTTGGTAGTCAGTGGACACTCAAATTCTCATGAGTGGAAAGCATTTTACCAAGAGGTGTCCACTGTAGAATATTATGTACTGCCGGTTAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATTGATGATGATGGAGAAGATATCCTTCCTACAGAAGTTGGGCATAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCGTCTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGAAGCTTTATTTCATATTCCAGAGGTACAGAAAGCACTGAAGATGGTGGTGATGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGACGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATCGGTGTGTTAAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTTGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGGAGGGATTTGTATGGGCAACTCTTCATGGGAACTTGCGAACATCTACTTGTGCTGAATATTGGCAATGCTGAATCTTGTCTTAGGTACTACAATCAGAATGACATCCCCAAGGTTCTCCAAGTGCTTTATGCATCCTTGCAGCACAGACCAATATACCATGATATTTGCATGGCAGTGCTTCAGTATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAATTGTGAACTCAGCAAATATTAAGGAAGAGACAAAGCCTTCTCCTTTTTTACTTCCTCCAGTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCATTAACCTCTGCCAGTACAGCTTACTGCGACAATATGGTGCCATCTATTGATGCTTCATCAGTTGCCCCTCCAAGTTCTGCTCTTCAGTGTAATGGCAATGGTAGCAGTAGTGAGTACCCTGTTGTGACTACAAAGCTTCCTGAGGGCACTAGGATCGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCATCATTCCAACATCAACCATAGAAATTTTGATGATAGGCCAACAATGGTAGATCCTGGCAAGTGCTCTTCAGTAAATGGTCAATTTAGTTATTATGGCCATGCAAACCATACCGGGTTTCCCATAAATATTTCTTTCCAAACCAAGGAAAGCACTCAAGCTAGTTTTGAAAAGTGTGAACGCAATGTAACCAATAGTTTTGCCTACATGGGTTTCTCCTATAAGCCTTTGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTAGCTGCCTCACGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGTTGGTGCATTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTACGAAAGTGCTTGCTGGTTTTTCTCCTATAAAAAATGCGGAGGGAGTACTCCCTAGTATTGCAACCTACATTATGTACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAGTCCACAGAAGGCAATGGCGTAAGCGAGTGGAACAGGCCACAACATTTAGTGCTATCAAACCACTTTTACTTGAACTCGAGGAGAACATTCGGACAATTTCTTTCTGTGGGGACTGGGTTAAACTGATGGATGACTGGTTGGTTGAGTTTTCCATGGTACAAAGTGCCACATCCACTCTTGGAACAGCACAGAAGCGTGCACCAGGTGGGAGGCGTTACAAGAAGCGGTCAGCTAATGACGAAGCTACAGCTGAGGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCTATCTTGCCAAAATCCATGGTTAGAAAAGCAGCACGACAAGGTGGTTCAAGAAAAATTTCTGCCATTTTTTATGCTGATGGCATTGAAATTCCCAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTACAAATGAGTAGGAATGCATCGCAACTGGCACTACAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACTCTAAACTGGTAGAGGGGAAAAATTGTTATGGAATAGTTTTTGGGAGTCAGAAACATCTTCCTTCTCGGGTGATGAAAAATGTTATTGAAATAGAGCAAGATCCAAAAGGAAAGGATAAGTATTGGTTTTATGAAGCACGAATTCCTTTATATTTGGTGAAAGAGTATGAAGAAGGTAAGGGAAACATGCCATATAATGAAGAGCAGCACTTGAATACTGCATCTGGGTTGCATAGAAAGCGGCTAAAAACTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTACCAAGTGTAATGCATGCCAAGGCTATTGTCATGAGGGTTGTTCCACAAGTCAAATAGTCTCTGCAAATGAAGTTGAGTACTTGATCACGTGCAAGCAATGTTACCATGCCAGATTACTTGCTCAAAAAGAGAATAGTAATGAATCTCCAACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGTACAGTTTTGAAGAGATCAAAGCCTAGAACTCTTGATCAAGTACCGAAATCTTCCAAGACAAAGGCTAATAATCCCATGAAACAAGTTACTCCTGCGACGAGTTTGAAAAAAACAAAGGCTAAACGCTCTGAACTAGAACCAACTACTAGGATAAATGATAATCATCTTGACATGCAACAAGTTGCTTCTGTGGAAACTTCAGCTGCAAAACGCCATCGCAAAAATTGTTCTTGGGGCATTATATGGAAAAAGAAACATAATGAAGATTCAGGCGATTTCATGCTCAGGAACATACTTTTAAAAGGGAGCTCGAACATACCAGGACTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATACGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCCGTTGAACTTGAAGAATCCAAACTTTCTAATGTGTTGAGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAATGGCAAAAGGTCACGCACAAAAGCAAAGAAAGAACAACATTCTGGAGCAGATACCGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGCTGCTACTCCGGTCTTTCCTTTATATGATGATACTTCCGCCTTTTCTGCGGAGGATCCTAGTCATGTCTTTCCTGATGAGGATCCTACTCCCGTCTTTCCTGTTGAGGATGATCCTCTTCTTTTCTCTCTCACAAGTGTTGAACTGGTAACAGAACCCAAGATGGAAGAGGATATGGAGTGGAACGGTGTCTCTGCACCAGGGCCTCAGAAACTGCCAGTGAGAAGGAATGTTAAGAATGAGGGTGATGATGTTTCTTTTGAAGGTGTACCTTTGGATGCTGAATTCTCTACCTACCCTGCGGAGGAATCTACACCGTTGGAATATACCTCTGGTGTTGACTTTGACAACAAGCTGCCGAATGAGTCTCAAAATGTAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTACAGTCAGATGATGGTGGTCAGTTTGAGGGTGTTGACATGTCTGACGACTTGTCAGGATATATGGAAAATTCTACCACCAACACCACCCTTGGTCCTGAACCGTGCGATGCTAGTTTGGCAGATAAATCAGAACCTATGACTTACACCGGCCATAGTTGTATGCAATGTTCACAAATGGAACCAGTACCTGATCTCCGTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCACCGTGGGTTGAATTACCATCGCTTGGAAGTTGGAGGTGCGGCCATTGCCGGGAATATGCTGGTAGAATGCTTAGCTCTGCGACCTAA 5199 0.431 MEAPVARPRGRPRKRRRNDEENENEAKKLASMGTRPVALVGRFVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRSILVKEGEINGDLVGRKEKLEELVSKNGGKIGIGSKKGPVESTKEESGAGVCELKDGGLIEKDEEEGDEEDDEDVNSSSDSGTGLGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRQHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLIQYLVVSGHSNSHEWKAFYQEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNIRRESEVGIDDDGEDILPTEVGHRRVEPRYTFTSASEDKEATKFVSASNAVNQPGSFISYSRGTESTEDGGDDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMLGPTIAKGTSLRGAEIFGRDLYGQLFMGTCEHLLVLNIGNAESCLRYYNQNDIPKVLQVLYASLQHRPIYHDICMAVLQYWSVPESLLFHSVSSGAIVNSANIKEETKPSPFLLPPVGEGNLMKEEYPLTSASTAYCDNMVPSIDASSVAPPSSALQCNGNGSSSEYPVVTTKLPEGTRIESILSADSASVSVSHHSNINHRNFDDRPTMVDPGKCSSVNGQFSYYGHANHTGFPINISFQTKESTQASFEKCERNVTNSFAYMGFSYKPLSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSATKVLAGFSPIKNAEGVLPSIATYIMYMEECLRGLVVGPFLSSVHRRQWRKRVEQATTFSAIKPLLLELEENIRTISFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPGGRRYKKRSANDEATAEGCPENFVWWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISAIFYADGIEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDSKLVEGKNCYGIVFGSQKHLPSRVMKNVIEIEQDPKGKDKYWFYEARIPLYLVKEYEEGKGNMPYNEEQHLNTASGLHRKRLKTICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDATKCNACQGYCHEGCSTSQIVSANEVEYLITCKQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSKPRTLDQVPKSSKTKANNPMKQVTPATSLKKTKAKRSELEPTTRINDNHLDMQQVASVETSAAKRHRKNCSWGIIWKKKHNEDSGDFMLRNILLKGSSNIPGLKPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSNVLSFKCCKCRRIKSPVCPYSDLKPKRQEGNGKRSRTKAKKEQHSGADTDSGAISDMRECEAATPVFPLYDDTSAFSAEDPSHVFPDEDPTPVFPVEDDPLLFSLTSVELVTEPKMEEDMEWNGVSAPGPQKLPVRRNVKNEGDDVSFEGVPLDAEFSTYPAEESTPLEYTSGVDFDNKLPNESQNVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSDDLSGYMENSTTNTTLGPEPCDASLADKSEPMTYTGHSCMQCSQMEPVPDLRCEICGILIHSQCSPWVELPSLGSWRCGHCREYAGRMLSSAT 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01803 1732 ProSitePatterns Zinc finger PHD-type signature. 423 464 IPR019786 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 14 28 - -
Viun11g01803 1732 SMART PHD_3 422 465 IPR001965 -
Viun11g01803 1732 SMART PHD_3 1677 1721 IPR001965 -
Viun11g01803 1732 SMART PHD_3 1192 1240 IPR001965 -
Viun11g01803 1732 SMART PHD_3 1381 1429 IPR001965 -
Viun11g01803 1732 Pfam DDT domain 198 254 IPR018501 -
Viun11g01803 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1376 1435 IPR013083 -
Viun11g01803 1732 PANTHER PHD FINGER FAMILY PROTEIN 33 1688 - -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 146 161 - -
Viun11g01803 1732 ProSiteProfiles Zinc finger PHD-type profile. 420 467 IPR019787 -
Viun11g01803 1732 CDD Tudor_AtPTM-like 40 87 IPR047365 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1251 1318 - -
Viun11g01803 1732 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 300 343 IPR028942 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1 28 - -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1444 1465 - -
Viun11g01803 1732 ProSiteProfiles DDT domain profile. 197 257 IPR018501 -
Viun11g01803 1732 CDD PHD2_CHD_II 423 464 - -
Viun11g01803 1732 SMART testlast3 197 257 IPR018501 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1284 1305 - -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1442 1471 - -
Viun11g01803 1732 SUPERFAMILY FYVE/PHD zinc finger 395 466 IPR011011 -
Viun11g01803 1732 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1199 1229 IPR017896 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 138 190 - -
Viun11g01803 1732 SUPERFAMILY FYVE/PHD zinc finger 1380 1435 IPR011011 -
Viun11g01803 1732 MobiDBLite consensus disorder prediction 1251 1275 - -
Viun11g01803 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 482 IPR013083 -
Viun11g01803 1732 Pfam PHD-finger 423 465 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01803 Viun-Chr11 34062196 34073634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01803 287 556 EF-hand Containing Proteins AT5G22760 49.455 1.73e-74 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Viun11g01803 DDT 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01803 - - gmx:100796377 2406.71