LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01802	ATGGCAGAAACAGCAGGGGGAAGCTTCATACCTCACGTGCTCACTGTGCAAATTGGAGAGAATTTGGTTGGAACGATAATGTCATTTTTTGAGAAAGGCCCTCTATCGGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAACGTCACCATTCGTGAACATGCTGGTTCCAATCATATTATGAGATTTGAGGGTACCTTTGAGATATTGTCATTATCAGGAGCTTGCACCTTCGTTGGTGGTATTAATGGTCCAGTTCGTACAAGTGGATCGTTGAGCATTTCAATGGCTAAATCTGATGGAAATGTTTTGGGGGGAATTCTTGAGAGTGCATTGGTAGCATCTTGCCCTATTCAGCTTGTTATGGCCACTTTCAAGCAAAACATCAACAGTCAATTCAAGAGGAAACAATTGTTAGAATTTTCTAATGGCCCCCTTATGCTGGAAAGTCCAGATTCAGAAAGAGGTAAAACGAAAGTTCAAAAGTTGACAGAAGGAGACAAAAATTGTTCTTCACCACCACCAACAGAACTTGGTCCAACAACAGTATCTAATGGCGTAGCAGATAACGTGTTCTCTATTACACCTAATGGTATAGCGGATAATGTGTTTTCTGCTACATCAAATGGTGTAGTAGATAATGTGTTTTCTGCTACACTTAACGGAGTAGCAAATAATGTGTTTTCTATTACATCTAATGGAGTAACAGATGACGTGTTCTCTGTTACACCTAATGGAGTAACAAATAACGTGTTTTCTGTTACTCCTGATAGAGTAGCAGATATTACTGTTACTCCACACAATGTGCACTCTGCATGTATTATTGGTGTTGATATGGATCACCAGGCACCGCAATCTGCATCAGATGATTCAGATCGGAAGACTTCTGCAGAAGTGAATGCAAATGTTATGGAGTTATGA	921	0.4007	MAETAGGSFIPHVLTVQIGENLVGTIMSFFEKGPLSVCILSATGAISNVTIREHAGSNHIMRFEGTFEILSLSGACTFVGGINGPVRTSGSLSISMAKSDGNVLGGILESALVASCPIQLVMATFKQNINSQFKRKQLLEFSNGPLMLESPDSERGKTKVQKLTEGDKNCSSPPPTELGPTTVSNGVADNVFSITPNGIADNVFSATSNGVVDNVFSATLNGVANNVFSITSNGVTDDVFSVTPNGVTNNVFSVTPDRVADITVTPHNVHSACIIGVDMDHQAPQSASDDSDRKTSAEVNANVMEL	306

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01802	306	MobiDBLite	consensus disorder prediction	165	182	-	-
	Viun11g01802	306	CDD	DUF296	11	125	IPR005175	-
	Viun11g01802	306	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	4	174	IPR039605	GO:0003680
	Viun11g01802	306	Gene3D	-	11	142	-	-
	Viun11g01802	306	ProSiteProfiles	PPC domain profile profile.	6	146	IPR005175	-
	Viun11g01802	306	MobiDBLite	consensus disorder prediction	282	306	-	-
	Viun11g01802	306	SUPERFAMILY	AF0104/ALDC/Ptd012-like	8	130	-	-
	Viun11g01802	306	MobiDBLite	consensus disorder prediction	163	182	-	-
	Viun11g01802	306	Pfam	Plants and Prokaryotes Conserved (PCC) domain	11	126	IPR005175	-

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01802	Viun-Chr11	34028282	34030826	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01802	4	151	AT-hook Motif Nuclear Localized (AHL) Family	AT4G12080	40.940	3.29e-29	112

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01802	-		-	vun:114168233	603.208

Showing 1 to 1 of 1 entries