Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01797 ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAACGGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTACATACACATCTCTCAGGTTGCCCTTGGAGAGGCGAAAAAGGAGAAGGCAAATGAACCTGTGGTTGTGTACGTGAAAGTTGGTGACCAGAAAATTGTTTTGGGAACCCTTAAAAGGGATGATATCCCTCACCTCTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTATCGCACTCTTCGAAAACTGCTAGCGTATTTTTTTGTGGATACAAAGTTCTAACTGACGAGGGTAACATTTCTGACTTTTCTGATAGTGACGAAGAGGAGGAGGATCTTCCCTTGAAAGGTCAAGATAATGGGAAACCCGTAACAAAAGTTGAAGGTGCAAAGGTTACCAAGCCCTCTAAACCTGCTCCCGTGAAAGGTGCATCGGTGAAACAAGCAAAGACGGTTGATCCAAAGAAAGACGAGGAGGATGATTCTGATTCTGACGAATCTGATGATGAGCTTGCTGGTATTGATGAATCTGAATCTTCTGACGAGATGGATGATGATAGCGAGAGTGATGAGGAGAGTGAAAGTGATGAAGAGACCCCTGTGAAGAAAGTGAATCAGGGCAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCCGTCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGATGGTAAGAAAAATGTACACGTAGCAACTCCCTATCCTACGAAGAAAGGTGGAAAGACTCCCAAAAACCCTACAAAAGGGCAGTCTCCTATTTCTGCTGGACAACTATCTTGCGGGACTTGTAAAAAGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGA 912 0.4474 MDSPMEFWGVEVKVGQTVKVDPMDPVSAYIHISQVALGEAKKEKANEPVVVYVKVGDQKIVLGTLKRDDIPHLSLDLVLDSDSELSHSSKTASVFFCGYKVLTDEGNISDFSDSDEEEEDLPLKGQDNGKPVTKVEGAKVTKPSKPAPVKGASVKQAKTVDPKKDEEDDSDSDESDDELAGIDESESSDEMDDDSESDEESESDEETPVKKVNQGKKRQNESASKTPVSSKKAKTATPEKTDGKKNVHVATPYPTKKGGKTPKNPTKGQSPISAGQLSCGTCKKNFANEDGLQQHKKAKHGGQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01797 303 MobiDBLite consensus disorder prediction 262 283 - -
Viun11g01797 303 MobiDBLite consensus disorder prediction 204 218 - -
Viun11g01797 303 ProSitePatterns Zinc finger C2H2 type domain signature. 279 300 IPR013087 -
Viun11g01797 303 MobiDBLite consensus disorder prediction 166 203 - -
Viun11g01797 303 FunFam Histone deacetylase HDT1 5 105 - -
Viun11g01797 303 Gene3D Nucleoplasmin core domain 2 107 - -
Viun11g01797 303 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Viun11g01797 303 MobiDBLite consensus disorder prediction 219 234 - -
Viun11g01797 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 303 IPR013087 -
Viun11g01797 303 MobiDBLite consensus disorder prediction 108 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01797 Viun-Chr11 33949042 33951904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01797 5 100 C2H2 Transcription Factor Family AT3G44750 52.083 4.40e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01797 NPL 4.5e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01797 - - gmx:547649 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03266 5 43353145 43354391 Viun11g01797 11 33949042 33951904 PCT