Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01777 ATGATTAACATGAAGAACATGAAGAACAACGAATCTACTTGCTCCATTTCACTGTCTCCGCCAAACCCTAATCCACTCTGCGATTCTCCGAATCCGTCTCACAAGAGAAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGGCACCCTGTGTATAGGGGTGTGCGCCAAAGAAACGGTAACAGATGGGTGTGTGAAATTAGGGAACCACTGAAAAAGTCAAGGATTTGGGTAGGGACATACCCTACTCCTGAAATGGCTGCTAGGGCACACGACGTGGCTGTTTTAGCCCTTAATGGCCTCTCTGCTAACTTCAATTTCCCCGATTCTGTTTCTCTTCTTCCCCTCGCCAAGTCTTCTTCTGCTGCAGATATAAGGGAAGCAGCAAAAGCTGCTACTGTTCATACTGTTGATACTGTTGATGATACTTTCACGCCAAACACTGATTTTTCTTGTTCCTCTCGAGGCAATTCTGGTTTTGAAGAAAATGGGAATGCTGAAGAGAGTTTTTTGAACATGAACATGCACAACGATGAGTCTGAAACAGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTTTTTTGGATAGTATGGCAGAGGGTTTGCTAATTACACCACCCTCTAGAGCACTGGACTGGGACCATTCTGATTCTGAAATAGACCTTACACTGTGGAATAACTGA 687 0.4425 MINMKNMKNNESTCSISLSPPNPNPLCDSPNPSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPLKKSRIWVGTYPTPEMAARAHDVAVLALNGLSANFNFPDSVSLLPLAKSSSAADIREAAKAATVHTVDTVDDTFTPNTDFSCSSRGNSGFEENGNAEESFLNMNMHNDESETVFFDEEALYNMPGFLDSMAEGLLITPPSRALDWDHSDSEIDLTLWNN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01777 228 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Viun11g01777 228 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g01777 228 MobiDBLite consensus disorder prediction 1 43 - -
Viun11g01777 228 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Viun11g01777 228 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Viun11g01777 228 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Viun11g01777 228 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Viun11g01777 228 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Viun11g01777 228 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Viun11g01777 228 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 227 IPR045277 GO:0003700
Viun11g01777 228 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01777 Viun-Chr11 33773180 33774363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01777 35 227 AP2-EREBP Transcription Factor Family AT4G25490 47.208 1.12e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g01777 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01777 - - gmx:100793751 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01777 11 33773180 33774363 Viun11g01777 11 33773180 33774363 ECH
Viun5g03250 5 43173640 43174320 Viun11g01777 11 33773180 33774363 PCT