Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01752 ATGTATAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAACAAAGGTAATTACGCGAAAGCGTTTCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACGGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTCCTAGATGATGGGCCCAGCGGCCCACCTTCCTCCGGGGATGCTGCTGTCGCTACCAGGCCCAAGACTAAGCCCAAGGACGGCGCCGGCGGTGACGGGGAGGATCCTGAACAGGCCAAGCTCCGGGCCGGGCTCAACTCTGCCATCGTTAGAGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTGGAGAGTGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCTGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCGACATTCTTCAGCATTTTTTAA 588 0.534 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGAGGDGEDPEQAKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01752 195 SUPERFAMILY MIT domain 2 83 IPR036181 -
Viun11g01752 195 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Viun11g01752 195 Gene3D - 125 194 IPR027417 -
Viun11g01752 195 Gene3D - 6 75 - -
Viun11g01752 195 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Viun11g01752 195 PANTHER AAA DOMAIN-CONTAINING 18 194 - -
Viun11g01752 195 SMART smart 2 79 IPR007330 -
Viun11g01752 195 CDD MIT_VPS4 4 76 IPR045253 -
Viun11g01752 195 Pfam ATPase family associated with various cellular activities (AAA) 167 194 IPR003959 GO:0005524|GO:0016887
Viun11g01752 195 MobiDBLite consensus disorder prediction 71 109 - -
Viun11g01752 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01752 Viun-Chr11 33537531 33539768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01752 105 194 Calmodulin-binding Proteins AT3G56690 40.000 8.93e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01752 K12196 - gmx:100791614 373.244