Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01746 ATGGAGTGCAATGTGGAGAACAAAAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATCTTCTTCTTCTTCTTCTTCTTCTTTTTCCTTCACTCATGAAACCATCCAATTCTTGCCCATTTTAACTGAAAAGGCCTCAAAAGATGAAGAACATCATCATCTGCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGATCAGGTTGTTGTTGATGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGAAGAAGAACCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTCAACCAAGAAAGAAGGTTCTGGATTCCAACTCCTGCTCAGATCCTCGTTGGTCCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATATAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATAAACCATCCGAGGGCGAAGCCATTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGAAAGCACGGCACAAAGCCGTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGGAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCACTGAAGGACCATATCAGGTCCTTTGGGAAGGGACACAACCCTCACCCTCCCTTCCAAGCTTTTGAGGATGAGAAGGAATGCATCACTGCCTCTGATGAAGATGATGCCAATGCTCATCATCATCATCATCATCATGCATGA 942 0.4416 MECNVENKKNLYLHAPTFIEWLKPSSSSSSSSFSFTHETIQFLPILTEKASKDEEHHHLQSFEVKEEKLEQVTVALHIGLPDSAKRHHDQVVVDDDDDEKMIFHVKEEEEEEPSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFQAFEDEKECITASDEDDANAHHHHHHHA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01746 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Viun11g01746 313 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Viun11g01746 313 SMART c2h2final6 144 166 IPR013087 -
Viun11g01746 313 SMART c2h2final6 191 223 IPR013087 -
Viun11g01746 313 SMART c2h2final6 228 248 IPR013087 -
Viun11g01746 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 248 IPR013087 -
Viun11g01746 313 Gene3D Classic Zinc Finger 187 274 - -
Viun11g01746 313 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Viun11g01746 313 Gene3D Classic Zinc Finger 143 166 - -
Viun11g01746 313 SUPERFAMILY beta-beta-alpha zinc fingers 116 167 IPR036236 -
Viun11g01746 313 PANTHER ZINC FINGER PROTEIN WIP2 24 302 IPR043584 GO:0003700|GO:0010468
Viun11g01746 313 Pfam Zinc finger, C2H2 type 144 163 IPR013087 -
Viun11g01746 313 FunFam Zinc finger protein WIP2 197 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01746 Viun-Chr11 33489379 33492786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01746 4 297 C2H2 Transcription Factor Family AT1G08290 53.333 7.92e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01746 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01746 - - gmx:100802773 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03224 5 43008491 43012440 Viun11g01746 11 33489379 33492786 PCT