Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01728 ATGTACTCTCCTCATCTGCAACATCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGACACATGTTCCTTCACACTGGAAATGGATCTGGTGACTCTGGTCTTGTTCTCTCGACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTCATAGAAGCTGTGCAGCAGTTAGGAGGAGCTGACAAGGCAACTCCCAAAACGGTAATGAAACTCATGGGGATTTCAGGCCTTACTTTGTATCATCTGAAGAGCCACCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGTAATAACGTGACACACAAAATCTCCATAAACCCAGGTGCAGCAACGGATGAAAGACTCAGAGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCCCCTCAGTCTAATAACAAAGATTTACACATCAGTGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTCCGGATAGAAGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGCAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGATTTAGTGTCAAAAGTGTCTTCTCAGTGTCTGAATTCAGCATTTTTAGAGCTGAAAGAGTTACAAGGATTTAGCCCTCACCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGCCTCACATCCTGTGAAGTGTCACAGAAAGAGCAAGAGATACAAAACGGAGGAATGAGCTTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGGTCATAGAGGGTCCTAATCTGAACAACCTACCAAGCACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTTACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGAAAGAATCAGTGAAACCAGTGGCTGAGAAAGTTTCTCAAGATTATGGATTGCCTTCATTCTTTGCTGCACCAAAACTGGACCTAGCCACTGAAGATAAGAACACTAGAACTAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1188 0.431 MYSPHLQHQGKNIHSSSRMPIPSERHMFLHTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNNVTHKISINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSPHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPSTDLKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGETENGSTIRKESVKPVAEKVSQDYGLPSFFAAPKLDLATEDKNTRTSCKELDLNGFSWN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01728 395 Coils Coil 153 173 - -
Viun11g01728 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 277 IPR044848 GO:0003700
Viun11g01728 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Viun11g01728 395 Gene3D - 46 104 - -
Viun11g01728 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Viun11g01728 395 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Viun11g01728 395 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Viun11g01728 395 Pfam MYB-CC type transfactor, LHEQLE motif 151 197 IPR025756 -
Viun11g01728 395 FunFam Myb family transcription factor 46 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01728 Viun-Chr11 33387015 33389553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01728 79 395 G2-like Transcription Factor Family AT3G04030 50.303 2.46e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun11g01728 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01728 - - gmx:100805237 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03213 5 42927118 42929445 Viun11g01728 11 33387015 33389553 PCT