LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01724	ATGGCTGAGGCGGATGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCCGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGACAAATTGTCAATGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTATTCGTCCTCTAAAAGCTTCCCTTGAAGCAGAGTTTAGGAAGAAGAATGTTGGAAAGAAAGCGGCTGTGGGAAAGGGAAAAGAAGAAGAGCAGAGAAAGAAAAGGAAATTGGAAGCTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGACGAGTCATCTGATAAAGCGGAGGGTTCTGATAAAGGTGAGGGCGAAGACGATGAATAA	459	0.4553	MAEADELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEAEFRKKNVGKKAAVGKGKEEEQRKKRKLEAESSDKGEASINDESSDKAEGSDKGEGEDDE	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01724	152	MobiDBLite	consensus disorder prediction	102	152	-	-
	Viun11g01724	152	FunFam	DNA polymerase epsilon subunit 3	1	141	-	-
	Viun11g01724	152	Coils	Coil	110	130	-	-
	Viun11g01724	152	SUPERFAMILY	Histone-fold	7	125	IPR009072	GO:0046982
	Viun11g01724	152	MobiDBLite	consensus disorder prediction	102	144	-	-
	Viun11g01724	152	Gene3D	Histone, subunit A	2	151	IPR009072	GO:0046982
	Viun11g01724	152	PANTHER	DNA POLYMERASE EPSILON SUBUNIT 3	4	145	-	-
	Viun11g01724	152	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	6	75	IPR003958	-
	Viun11g01724	152	Coils	Coil	58	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01724	Viun-Chr11	33362749	33364737	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01724	7	92	CCAAT-HAP3 Transcription Factor Family	AT4G14540	29.070	5.87e-08	47.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Viun11g01724		CBFD_NFYB_HMF	7.3e-07	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01724	K02326		-	gmx:100306382	198.364