Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01708 ATGGAAGACCATCATCCACCTGGGTTTCGCTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACGAAATAAGCTCGATGGTTCAATAAATGCTGCCGCCGCCGCCATTGATAGAGTTATACCAGTTGTTGATATCAATTCCCTGGAACCATGGAACCTCCCAACACTTGCTGGGGAGCTATGTCGTGGGGATACAGAGCAATGGTTTTTCTTTTCACCTGGGCAAGAGAGAGAAGCGAGAGGAGGGAGACCAAGCAGAACCACATCGTGTGGGTACTGGAAAGCCACTGGTTCACCTGGCTATGTTTATTCTTCTGATAACAGAGTCATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGAAAAGCTCCTATGGGAAGAAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCTCAGTCCCTCACCAATCCAACCCTGTCACCCCTCAGTTGAGATGCGAATTCAGCTTATATCGGGTGTACATCGTATCTGGAAGCTTTCGAGCATTTGATCGACGTCCATCGGAGAGTGGAGGAACAGAGTCACGTGTTCATCAGAGTTCTTCATCTCAGGTTTCTCACTTGCTGGAACTTTCTCAGCTTTCTCAGCTCCCAGAAGGTGGAGGAGATTCAAGTAGCACGAACTGGAACGAGGAACAGCTTCAAGAACCGTCGTGGGAATTGGATTGGGAACACTTCAATTGGGTCTGA 720 0.4764 MEDHHPPGFRFFPTEEELVGFYLRNKLDGSINAAAAAIDRVIPVVDINSLEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTSCGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAISVPHQSNPVTPQLRCEFSLYRVYIVSGSFRAFDRRPSESGGTESRVHQSSSSQVSHLLELSQLSQLPEGGGDSSSTNWNEEQLQEPSWELDWEHFNWV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01708 239 Pfam No apical meristem (NAM) protein 6 139 IPR003441 GO:0003677|GO:0006355
Viun11g01708 239 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 186 - -
Viun11g01708 239 MobiDBLite consensus disorder prediction 206 225 - -
Viun11g01708 239 ProSiteProfiles NAC domain profile. 5 166 IPR003441 GO:0003677|GO:0006355
Viun11g01708 239 MobiDBLite consensus disorder prediction 206 226 - -
Viun11g01708 239 MobiDBLite consensus disorder prediction 175 194 - -
Viun11g01708 239 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Viun11g01708 239 SUPERFAMILY NAC domain 4 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01708 Viun-Chr11 33272503 33273871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01708 1 238 NAC Transcription Factor Family AT5G22380 54.357 2.37e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun11g01708 NAM 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01708 - - gmx:100808618 357.451