Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01676 ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACTGCCTCCTCCAACCCACCCGATCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCTTCCATGAAACCGCCCTTCGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGCCTCGACGCTGAAGCCGTCGTCGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGATCCACTGAACCAGCTAATAGTCCTTTTCGTACACCTGTATCAGGAAAGACAGGGAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCTGGCAATAATCTAACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCCGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGAAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAGTGGAAGGGACTGGATGTTTCAAGACCGGGAGAGGCTGATGATAGTTTTGCCAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGACGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTGCCCTGCTTCCAGAACGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAGCGGAGATATAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGTTAACAAACATCAGTCAACAGTGGTTCCAGAGGATAGAGGGAAAGGCATAGATGTTCAAGGACCAGATGTTGGGCCAAGTTCTGAGTTTACTACCTCACAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAATTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGAGAATACTTCGACCCCCAGTCATCCGTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1389 0.4658 MSAPRAPSAAATATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDHRRLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVAPKLPSSPDVNKHQSTVVPEDRGKGIDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTRENTSTPSHPSNVGEVSSTSKPSGG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01676 462 MobiDBLite consensus disorder prediction 428 462 - -
Viun11g01676 462 Gene3D - 138 211 IPR036388 -
Viun11g01676 462 CDD E2F_DD 220 326 IPR032198 GO:0046983
Viun11g01676 462 Gene3D - 216 326 - -
Viun11g01676 462 MobiDBLite consensus disorder prediction 7 24 - -
Viun11g01676 462 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Viun11g01676 462 SUPERFAMILY E2F-DP heterodimerization region 223 326 IPR037241 -
Viun11g01676 462 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Viun11g01676 462 MobiDBLite consensus disorder prediction 71 115 - -
Viun11g01676 462 Coils Coil 222 263 - -
Viun11g01676 462 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Viun11g01676 462 Coils Coil 160 180 - -
Viun11g01676 462 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Viun11g01676 462 FunFam E2F transcription factor 1 138 211 - -
Viun11g01676 462 MobiDBLite consensus disorder prediction 342 378 - -
Viun11g01676 462 MobiDBLite consensus disorder prediction 1 28 - -
Viun11g01676 462 PANTHER TRANSCRIPTION FACTOR E2F 87 427 IPR015633 GO:0000978|GO:0006357
Viun11g01676 462 MobiDBLite consensus disorder prediction 87 115 - -
Viun11g01676 462 MobiDBLite consensus disorder prediction 435 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01676 Viun-Chr11 33030388 33036200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01676 22 461 E2F-DP Transcription Factor Family AT5G22220 55.907 1.34e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun11g01676 E2F_CC-MB 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01676 K06620 - gmx:100819817 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01676 11 33030388 33036200 Viun11g01676 11 33030388 33036200 ECH