Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01661 ATGGCGACGTACTTTCATGGTAGCGCTTCGGAAATCCGTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCCAGCGCAAAACATGCTCCTCGTCAATCCCAATAACGCTAGTAATACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCACCCACGCGCCTCCACCGCCATCTCCCAACAACCACCGTGACCACCACCACCACCACCTGATTGGGCTTACCATTCCCTCTTCAAACATCATCGGATCGAATACCGCCGCCGGAGATCACGCTCGCCCATCGTTCCTTGGACAGCATGAATTCTCCGGCTTTCACGGCGGTGCTGCCGCGGCGGCAACAACAGCGTCAACTTCTCGTTCTAACTATAACCTATGGGGTTCCATATTCGATCAATCTGCTTCGAATATGGTGACAACAACAAACACGCCATCTGAAAATATAGGGTGTGTTGCTTCTGCTGTCAATCCATCGACCCAGATTGGTTTCCACAGGCCGAATCATTTGTCGCTAAGCCTTTCTTCGCAGCAAACACCTTACAGGTCTTTATCCGGGGACGTTCATGCTATATCTCCGGCGAGCCTCGGCGGCGAGGATATGAGGGGTTTGCAGAGCGGGGTTTCTAACATGCACAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAACACAGGAGCTTCTTGACGAAGTTGTGAATGTGGGGAGGGGAATCTCGAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGTGATGGTTCGAGCTGTGGAGGGGAGAACAATGACGGAGGGAAACAAGGAGGTGAACTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCGAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAACAGGCTGCGGGTGTTGGAGCGGCTAAGTCCTACACAGCCCTTGCGTTAAGGACAATATCAAAACAATTTCGGTGTCTGAAAGATGCTATCTCTTCGCAAATCAAGACAGCGAGCAAGACCTTGGGTGAAGATGATTGCTTGGGAGTTAAGGTAGAAGGTTCAAGGCTTAGGTATGTGGATCATCAACTGAGACAACAACGTGCGTTGCAGCAGCTAGGAATGATCCAACACAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTGGCAAAACAAACAGGACTTACTCGAAGCCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAGGTGAAGCAAGAACCTAACAATGGCTCACAAGACAATAACACGAATAGATCAAAAGAAAACAACAAGGAGTTATGGTCAGAAGCTAATGCTGCTACCCAAGAATCCGGTGGCGTGAGACTTAATCAGATTAACGTTCTCCAATCAAAGGCAGAAAGTTTCAACAATAACAACCAAACCACTTCCCCAACAGAGATCTCGAATTCTAATTCACTCTCAACATCTCCAATGGGAGGAGGAGGTGGAGGAGGAGGGTCTCTTCAATCTGGTTTCCATCTTGGGGACATGCAAAGTCCAAACAAACCAAGAAGCACTTCTGAAATGCAAAACTCTCCGGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTCATGGAGAGACAAACACCAGAGAAGGAACCAACACAAAGTTTGGCATCGAAAACCATGGAGGGGGTTTTGGAGCATTTCCCATGGAAGACATTGGAAGGTTCCATCATGTGACTGAACAACTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACTCTCTCAGGAACTCAACATGGATTCCTCTCACCGAACATGCACTTGGGAATGAGAACAACCAACGAAAATGAGTTTTGTGGTACCATCAACACCCCAACTTCTTCTCATTCAGCCACCAGTTACGACAACATCGACATCCAAAACAGAAAGAGGTTCGCCGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2211 0.4826 MATYFHGSASEIRSSAEGLQTLYLMNPNYVPYSDAAQHPAQNMLLVNPNNASNTSPTSANALNLGNFTHAPPPPSPNNHRDHHHHHLIGLTIPSSNIIGSNTAAGDHARPSFLGQHEFSGFHGGAAAAATTASTSRSNYNLWGSIFDQSASNMVTTTNTPSENIGCVASAVNPSTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGEDMRGLQSGVSNMHSVVLGSKYLKSTQELLDEVVNVGRGISKGEESMEGAKKEKMKGNIESTSGVGDGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTALALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNNTNRSKENNKELWSEANAATQESGGVRLNQINVLQSKAESFNNNNQTTSPTEISNSNSLSTSPMGGGGGGGGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPHGETNTREGTNTKFGIENHGGGFGAFPMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGTINTPTSSHSATSYDNIDIQNRKRFAAQLLRDFVA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01661 736 MobiDBLite consensus disorder prediction 257 297 - -
Viun11g01661 736 Pfam Homeobox KN domain 436 475 IPR008422 GO:0003677|GO:0006355
Viun11g01661 736 CDD homeodomain 419 480 IPR001356 GO:0003677
Viun11g01661 736 MobiDBLite consensus disorder prediction 488 509 - -
Viun11g01661 736 MobiDBLite consensus disorder prediction 578 598 - -
Viun11g01661 736 MobiDBLite consensus disorder prediction 540 598 - -
Viun11g01661 736 SMART HOX_1 419 483 IPR001356 GO:0003677
Viun11g01661 736 Coils Coil 303 323 - -
Viun11g01661 736 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 503 - -
Viun11g01661 736 MobiDBLite consensus disorder prediction 48 83 - -
Viun11g01661 736 MobiDBLite consensus disorder prediction 540 564 - -
Viun11g01661 736 Gene3D - 422 501 - -
Viun11g01661 736 MobiDBLite consensus disorder prediction 257 271 - -
Viun11g01661 736 Pfam Associated with HOX 229 370 IPR006563 -
Viun11g01661 736 SMART prehox3 224 371 IPR006563 -
Viun11g01661 736 MobiDBLite consensus disorder prediction 48 65 - -
Viun11g01661 736 ProSiteProfiles 'Homeobox' domain profile. 416 479 IPR001356 GO:0003677
Viun11g01661 736 FunFam BEL1-like homeodomain protein 9 422 484 - -
Viun11g01661 736 SUPERFAMILY Homeodomain-like 420 485 IPR009057 -
Viun11g01661 736 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01661 Viun-Chr11 32840117 32844479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01661 1 736 Homeobox Transcription Factor Family AT2G35940 42.436 1.86e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun11g01661 POX 5.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01661 - - gmx:100786883 1127.46