Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01655 ATGGCAGAAGTTGAAATCCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAAGACCCTGTGACTACAGTGACAGGGATTACATATGACAGAGAAAGCATTGAAGAGTGGTTGCGTAAGGCCAAGGATTGTGTCTGTCCTGTTACCAAACAATCACTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACGCTTCGAAGGCTTATCCAAGCTTGGTGTTCAGCAAACACAGCCAATGGTGTTGATCCAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAACTCGTGAAGGGTCTTGATGCTCCTCATTCTTTTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCTGCACAAAGCCAGAGGAACAGAACCTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTGAAACTGATTAACAACAATTTCAAAGATGGAAATACAAAAACCAGTTCCGTGGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAACAACCACAGCAGCATGAAACCACTAGTTGGTGAGAGCTTGGACTTCATCAACTCGTTGACTTGGGTTTTGAAGCTTCATTTGGATGACAGCAACATCAAGATGGTGAACGAAGCAATGCCCCTTGTGAAGTTGACAATCGAGGTTGCTGATTCAACCCTTTTGGGAAATTTAAGCCTTGACTTCTTCAAGGAAATGGTGAGGGTATTGAAGAAAAGAGCACTATCTCAGCAAACTATAAAATCTGCTTTGCATGTTCTTGTACAAACCTGCGTTTTGGGTAGAAACAGAACGAGGATCGTTGAAGCAGGTGCAGTGGCAGAAGTCATAGAGCTTGAGCTTGAGAAGCCGGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTGTTGTGCTGAGGGAAGAGAACAGTTTCTAAGACATGCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTCTCACGGACGATAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCGAACGAGGTTGTTCTAGAGATGTTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTGGTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGTATACAACTGTATTTGTTTACTAGACACCAACGGTGA 1236 0.4377 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEEWLRKAKDCVCPVTKQSLPRSSQYLTPNHTLRRLIQAWCSANTANGVDPIPTPKTPLSMIQVQKLVKGLDAPHSFGTSLEKLHALAAQSQRNRTCMAEAGVAKAMVKLINNNFKDGNTKTSSVEEALRIVHLLWNNNHSSMKPLVGESLDFINSLTWVLKLHLDDSNIKMVNEAMPLVKLTIEVADSTLLGNLSLDFFKEMVRVLKKRALSQQTIKSALHVLVQTCVLGRNRTRIVEAGAVAEVIELELEKPEKNMTELIFNLLAHLCCCAEGREQFLRHAAGIAVVSKRVLRVSALTDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCAGYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01655 411 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Viun11g01655 411 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
Viun11g01655 411 Gene3D - 114 394 IPR011989 -
Viun11g01655 411 SUPERFAMILY RING/U-box 3 85 - -
Viun11g01655 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Viun11g01655 411 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Viun11g01655 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
Viun11g01655 411 CDD RING-Ubox_PUB 7 58 IPR045210 -
Viun11g01655 411 SUPERFAMILY ARM repeat 118 373 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01655 Viun-Chr11 32793586 32795366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01655 3 401 U-box Gene Family AT2G35930 40.099 6.89e-102 306
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03156 5 42518580 42520438 Viun11g01655 11 32793586 32795366 PCT