Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01654 ATGGATGAAATGGAGGTTCCTGCACTTTTCCTGTGTCCAGTTTCTTTGCAGCTTATGAGAGAACCCGTGACAGTGTGCACAGGAATCACATACGACAGAGAAAACATAGAGCGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCGACGTTTGATCCAAGCATGGTGCGACCACAATGTCTGTCTCGGACATGAAACCTTTTCATCTCCAAACCCAACAACCATTGACCAAACCGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCGGAAAAACAGCTCAAGTGTCTCAGTAGGCTTCAATGTATTGCTCTCGAAAGTGAAAGTAGCAAAATCTGTTTGGAGTCTGCTGGGGCAATCGATTTCTTGGCTTCCACCATGATGATAAACTCAACTGGTATGAGTGAAGCAGCTATAGAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAACGAAGGGATTCAGTTTGTTGAGTCTTTGGTTCATGTGTTGAAGCTTGGAAAGCACCAATCTCGAGGTTATACAACTTTGCTATTGAAGTCAGCATTTAAGGTGGCTAGCCCAACCCAATTGAACAATGCCACCCGAGAAGTGTTTGTGGAGATAGTTAGAGTGTTGAGGGATCAGATTTCAATGGAGGCTTCAAAGGCAGCTTTGAAGCTTCTGGTTGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGGGTTTTAGTCCTCGTTGAGCTACTTCTTGAGGTGTCTGAGAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGAGAAACTATGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGATTTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTCAAAATTTTGAGCTCCATTTGTAGGTATTCAGCCACCCCTAGAGTTCTTCATGAAATGCTGCTGTTTGGGGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAGGGAGACACTCAAATTGCACTCTCTGGTTTGGAGGAACTCTACATGCATTCCTCTTCCTTTGCTTGCATCTTATCCATGA 1203 0.4447 MDEMEVPALFLCPVSLQLMREPVTVCTGITYDRENIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLRRLIQAWCDHNVCLGHETFSSPNPTTIDQTEIVKLLLEAKKFPEKQLKCLSRLQCIALESESSKICLESAGAIDFLASTMMINSTGMSEAAIEIMFHLNPSESQLKNLMNNEGIQFVESLVHVLKLGKHQSRGYTTLLLKSAFKVASPTQLNNATREVFVEIVRVLRDQISMEASKAALKLLVELCSWGRNKIKAVESGGVLVLVELLLEVSERRACELMLIALEKLCGCAEGRAELVNHGAGFAVVAKKILRVSQVASDRGVKILSSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGCFKAKERARETLKLHSLVWRNSTCIPLPLLASYP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01654 400 Gene3D - 82 387 IPR011989 -
Viun11g01654 400 CDD RING-Ubox_PUB 7 61 IPR045210 -
Viun11g01654 400 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Viun11g01654 400 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Viun11g01654 400 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Viun11g01654 400 SUPERFAMILY ARM repeat 109 362 IPR016024 -
Viun11g01654 400 PANTHER WDSAM1 PROTEIN 3 392 IPR045185 GO:0061630
Viun11g01654 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Viun11g01654 400 SUPERFAMILY RING/U-box 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01654 Viun-Chr11 32774295 32775895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01654 2 400 U-box Gene Family AT2G35930 49.383 5.23e-136 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01654 - - gmx:100778012 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03155 5 42512287 42512843 Viun11g01654 11 32774295 32775895 PCT