Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01648 ATGTTTGGGAGGGCACCAAAGAAGAGCGATAACACACGGTACTACGAAATCCTCGGCGTCTCCAAAAACGCTTCACAGGATGATTTGAAGAAAGCTTACAAGAAAGCAGCCATCAAGAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAATTGGCTCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCGCTTAAGGAAGGAATGGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTTTCATCTTTCTTTGGCGGTGGGAGTCCTTTTGGATCAGGTGGTAGTAGTCGTGGTAGGAGACAGAGGCGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTCTGGAGGACCTTTACCTAGGGACTTCAAAGAAGCTGTCCCTCTCCAGAAATGTCATATGCTCCAAGTGCAGTGGCAAGGGTTCTAAGTCTGGGGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGGCACCTTGGTCCATCCATGATTCAACAAATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGATAGAGATCGCTGCCCACAATGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAAGTTCTTGAAGTGATTGTTGAAAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGACACAATTACTGGGGATATCGTCTTTGTGCTTCAGCAGAAGGAGCATCCTAAATTCAGAAGAAAGGCCGAAGACCTTTTTGTTGAGCACACCTTGTCCCTTACTGAGGCTTTGTGTGGTTTCCAATTTGTCCTAACTCACTTGGATGGGCGTCAGCTTCTTATTAAATCAAATCCCGGGGAAGTTGTGAAACCTGATTCATACAAGGCTATTAATGACGAGGGGATGCCCATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTATCTTCACTTCACTGTGGAATTCCCAGATTTTCTAAATCCTGATCAGGTTAAGGCTTTGGAAGCCGTTCTGCCCCCAAAGCAGCCTTCACAGTTAACAGACATGGAGCTGGACGAATGTGAGGAGACCACACTTCATGATGTCAATATGGATGAGGAGTCTAGGAGGAGGCAACAACAAGCTGCTCAGGAAGCATATGAGGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAACAGTAG 1257 0.4741 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYLHFTVEFPDFLNPDQVKALEAVLPPKQPSQLTDMELDECEETTLHDVNMDEESRRRQQQAAQEAYEEDDDMPGGAQRVQCAQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01648 418 CDD DnaJ 14 63 IPR001623 -
Viun11g01648 418 MobiDBLite consensus disorder prediction 379 398 - -
Viun11g01648 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Viun11g01648 418 FunFam DnaJ subfamily A member 2 148 214 - -
Viun11g01648 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Viun11g01648 418 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Viun11g01648 418 FunFam Chaperone protein dnaJ 3 289 360 - -
Viun11g01648 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 382 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun11g01648 418 SMART dnaj_3 12 66 IPR001623 -
Viun11g01648 418 MobiDBLite consensus disorder prediction 379 418 - -
Viun11g01648 418 Gene3D - 148 214 - -
Viun11g01648 418 FunFam dnaJ protein homolog 10 109 - -
Viun11g01648 418 Gene3D - 109 260 - -
Viun11g01648 418 Pfam DnaJ domain 14 71 IPR001623 -
Viun11g01648 418 Gene3D DnaJ domain 10 108 IPR036869 -
Viun11g01648 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Viun11g01648 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Viun11g01648 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Viun11g01648 418 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Viun11g01648 418 FunFam Chaperone protein dnaJ 3 215 255 - -
Viun11g01648 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 114 272 IPR008971 GO:0006457|GO:0051082
Viun11g01648 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Viun11g01648 418 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Viun11g01648 418 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Viun11g01648 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 398 IPR044713 GO:0006457|GO:0030544
Viun11g01648 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Viun11g01648 418 CDD DnaJ_C 119 346 - -
Viun11g01648 418 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Viun11g01648 418 Gene3D - 262 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01648 Viun-Chr11 32693928 32696728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01648 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.13e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01648 K09503 - gmx:547558 711.064