Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01642 ATGGATGTATTGAATGTGCCACACCACACCACACTCTCCCTAGCTGGACACTGCGCACACCCCCCCTTAAAAGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCACAAGACCCTCAGTCACAGAAACCGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGACAGTAGAGCATGAACAGCCAAGGATTCCTCCCATTCGTCCCACAGAAAAGAGACATCGTGTGCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAGAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCCGCAGCAAAAAATGTTTATATGTGTACGCAGTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTGAAGGAAAGTTGGAGCAGGGAGAAGGTGGTGAAAAGACCAATGGATTCTACTGA 570 0.4579 MDVLNVPHHTTLSLAGHCAHPPLKVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKPHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNVYMCTQWAHFPHIHFGLKLDGNSEGKLEQGEGGEKTNGFY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01642 189 SUPERFAMILY HMG-box 105 146 IPR036910 -
Viun11g01642 189 CDD HMG-box_SF 114 148 - -
Viun11g01642 189 PANTHER PROTEIN YABBY 6-RELATED 22 175 IPR006780 GO:0007275
Viun11g01642 189 Pfam YABBY protein 23 166 IPR006780 GO:0007275
Viun11g01642 189 MobiDBLite consensus disorder prediction 92 114 - -
Viun11g01642 189 MobiDBLite consensus disorder prediction 57 114 - -
Viun11g01642 189 MobiDBLite consensus disorder prediction 57 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01642 Viun-Chr11 32657891 32663308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01642 23 189 C2C2-YABBY Transcription Factor Family AT1G08465 61.628 2.98e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun11g01642 YABBY 1.3e-53 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01642 K25796 - gmx:100500026 276.174